update links and metadata

ropensci · Jan 23, 2024 · 39beb70 · 39beb70
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: rangr
 Type: Package
 Title: Mechanistic Simulation of Species Range Dynamics
-Version: 1.0.2
+Version: 1.0.3
 Authors@R: c(
     person("Katarzyna", "Markowska", email = "katarzyna.markowska@amu.edu.pl", role = c("aut", "cre")),
     person("Lechosław", "Kuczyński", email = "lechu@amu.edu.pl", role = "aut"),
@@ -35,5 +35,5 @@ Depends:
     R (>= 3.5.0)
 Config/testthat/edition: 3
 URL: https://github.com/ropensci/rangr,
-    https://popecol.github.io/rangr/
+    https://ropensci.github.io/rangr/
 BugReports: https://github.com/ropensci/rangr/issues
diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+# rangr 1.0.3 (2024-01-23)
+
+### Minor improvements
+
+-   Remove `print()` from the vignette
+
 # rangr 1.0.2 (2024-01-16)
 
 ### Major improvements

diff --git a/README.Rmd b/README.Rmd
@@ -26,7 +26,7 @@ library(rangr)
 
 <!-- badges: start -->
 
-[![Status at rOpenSci Software Peer Review](https://badges.ropensci.org/595_status.svg)](https://github.com/ropensci/software-review/issues/595) [![Project Status: Active -- The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![R-CMD-check](https://github.com/ropensci/rangr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/rangr/actions/workflows/R-CMD-check.yaml) [![codecov](https://codecov.io/gh/ropensci/rangr/branch/main/graph/badge.svg?token=ZDNBMHBYXW)](https://codecov.io/gh/ropensci/rangr)
+[![Status at rOpenSci Software Peer Review](https://badges.ropensci.org/595_status.svg)](https://github.com/ropensci/software-review/issues/595) [![Project Status: Active -- The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![R-CMD-check](https://github.com/ropensci/rangr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/rangr/actions/workflows/R-CMD-check.yaml) [![codecov](https://codecov.io/gh/ropensci/rangr/graph/badge.svg?token=noq7E0HSe2)](https://codecov.io/gh/ropensci/rangr)
 
 <!-- badges: end -->
 
@@ -173,7 +173,7 @@ plot(my_rast, c(1, 10, 25, 50))
 
 # Vignettes
 
--   [Workflow examples](https://popecol.github.io/rangr/articles/rangr.html)
+-   [Workflow examples](https://ropensci.github.io/rangr/articles/rangr.html)
 
 # Citation
 

diff --git a/README.md b/README.md
@@ -9,7 +9,7 @@ Review](https://badges.ropensci.org/595_status.svg)](https://github.com/ropensci
 state and is being actively
 developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![R-CMD-check](https://github.com/ropensci/rangr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/rangr/actions/workflows/R-CMD-check.yaml)
-[![codecov](https://codecov.io/gh/ropensci/rangr/branch/main/graph/badge.svg?token=ZDNBMHBYXW)](https://codecov.io/gh/ropensci/rangr)
+[![codecov](https://codecov.io/gh/ropensci/rangr/graph/badge.svg?token=noq7E0HSe2)](https://codecov.io/gh/ropensci/rangr)
 
 <!-- badges: end -->
 
@@ -252,7 +252,7 @@ plot(my_rast, c(1, 10, 25, 50))
 # Vignettes
 
 - [Workflow
-  examples](https://popecol.github.io/rangr/articles/rangr.html)
+  examples](https://ropensci.github.io/rangr/articles/rangr.html)
 
 # Citation
 

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -1,4 +1,4 @@
-url: https://popecol.github.io/rangr/
+url: https://ropensci.github.io/rangr/
 
 reference:
   - title: Simulation preparation

diff --git a/codemeta.json b/codemeta.json
@@ -2,16 +2,19 @@
   "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
   "@type": "SoftwareSourceCode",
   "identifier": "rangr",
-  "description": "Set of tools for simulating species range dynamics.",
-  "name": "rangr: Mechanistic simulation of species range dynamics",
+  "description": "Species range dynamics simulation toolset.",
+  "name": "rangr: Mechanistic Simulation of Species Range Dynamics",
+  "relatedLink": "https://ropensci.github.io/rangr/",
+  "codeRepository": "https://github.com/ropensci/rangr",
+  "issueTracker": "https://github.com/ropensci/rangr/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "0.1.0",
+  "version": "1.0.3",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 4.2.3 (2023-03-15 ucrt)",
+  "runtimePlatform": "R version 4.3.0 (2023-04-21 ucrt)",
   "author": [
     {
       "@type": "Person",
@@ -61,45 +64,40 @@
     },
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-      "name": "parallel"
-    },
-    {
-      "@type": "SoftwareApplication",
-      "identifier": "pbapply",
-      "name": "pbapply",
+      "identifier": "testthat",
+      "name": "testthat",
+      "version": ">= 3.0.0",
       "provider": {
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         "@type": "Organization",
         "name": "Comprehensive R Archive Network (CRAN)",
         "url": "https://cran.r-project.org"
       },
-      "sameAs": "https://CRAN.R-project.org/package=pbapply"
+      "sameAs": "https://CRAN.R-project.org/package=testthat"
     },
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       "@type": "SoftwareApplication",
-      "identifier": "testthat",
-      "name": "testthat",
-      "version": ">= 3.0.0",
+      "identifier": "covr",
+      "name": "covr",
       "provider": {
         "@id": "https://cran.r-project.org",
         "@type": "Organization",
         "name": "Comprehensive R Archive Network (CRAN)",
         "url": "https://cran.r-project.org"
       },
-      "sameAs": "https://CRAN.R-project.org/package=testthat"
+      "sameAs": "https://CRAN.R-project.org/package=covr"
     },
     {
       "@type": "SoftwareApplication",
-      "identifier": "covr",
-      "name": "covr",
+      "identifier": "bookdown",
+      "name": "bookdown",
       "provider": {
         "@id": "https://cran.r-project.org",
         "@type": "Organization",
         "name": "Comprehensive R Archive Network (CRAN)",
         "url": "https://cran.r-project.org"
       },
-      "sameAs": "https://CRAN.R-project.org/package=covr"
+      "sameAs": "https://CRAN.R-project.org/package=bookdown"
     }
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   "softwareRequirements": {
@@ -110,37 +108,114 @@
     },
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-      "name": "raster",
+      "identifier": "parallel",
+      "name": "parallel"
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+      },
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+    },
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+      "identifier": "grDevices",
+      "name": "grDevices"
+    },
+    "5": {
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+      "identifier": "graphics",
+      "name": "graphics"
+    },
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+      "@type": "SoftwareApplication",
+      "identifier": "stats",
+      "name": "stats"
+    },
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+      "@type": "SoftwareApplication",
+      "identifier": "utils",
+      "name": "utils"
+    },
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+      "identifier": "zoo",
+      "name": "zoo",
       "provider": {
         "@id": "https://cran.r-project.org",
         "@type": "Organization",
         "name": "Comprehensive R Archive Network (CRAN)",
         "url": "https://cran.r-project.org"
       },
-      "sameAs": "https://CRAN.R-project.org/package=raster"
+      "sameAs": "https://CRAN.R-project.org/package=zoo"
     },
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+      "identifier": "terra",
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+      "sameAs": "https://CRAN.R-project.org/package=terra"
     },
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+        "url": "https://cran.r-project.org"
+      },
+      "sameAs": "https://CRAN.R-project.org/package=assertthat"
+    },
+    "11": {
       "@type": "SoftwareApplication",
       "identifier": "R",
       "name": "R",
-      "version": ">= 2.10"
+      "version": ">= 3.5.0"
     },
     "SystemRequirements": null
   },
-  "fileSize": "118774.041KB",
-  "codeRepository": "https://github.com/ropensci/rangr",
-  "readme": "https://github.com/ropensci/rangr/blob/master/README.md"
+  "fileSize": "2406.407KB",
+  "citation": [
+    {
+      "@type": "SoftwareSourceCode",
+      "datePublished": "2023",
+      "author": [
+        {
+          "@type": "Person",
+          "givenName": "Katarzyna",
+          "familyName": "Markowska"
+        },
+        {
+          "@type": "Person",
+          "givenName": "Lechosław",
+          "familyName": "Kuczyński"
+        }
+      ],
+      "name": "rangr: simulating range dynamics of virtual species",
+      "url": "https://github.com/ropensci/rangr",
+      "description": "R package version 0.1.0"
+    }
+  ],
+  "releaseNotes": "https://github.com/ropensci/rangr/blob/master/NEWS.md",
+  "readme": "https://github.com/ropensci/rangr/blob/main/README.md",
+  "contIntegration": ["https://github.com/ropensci/rangr/actions/workflows/R-CMD-check.yaml", "https://codecov.io/gh/ropensci/rangr"],
+  "developmentStatus": "https://www.repostatus.org/#active",
+  "review": {
+    "@type": "Review",
+    "url": "https://github.com/ropensci/software-review/issues/595",
+    "provider": "https://ropensci.org"
+  }
 }
diff --git a/inst/CITATION b/inst/CITATION
@@ -10,6 +10,6 @@ citEntry(
   note = "R package version 0.1.0",
   url = "https://github.com/ropensci/rangr",
   textVersion = paste(
-    "Markowska K. and Kuczyński L. (2023). rangr: simulating range dynamics of virtual species. R package version 0.1.0. https://popecol.github.io/rangr/"
+    "Markowska K. and Kuczyński L. (2023). rangr: simulating range dynamics of virtual species. R package version 0.1.0. https://ropensci.github.io/rangr/"
   )
 )
diff --git a/man/rangr-package.Rd b/man/rangr-package.Rd