Compile error under R version 4.3.1 (2023-06-16) on Ubuntu 22.04.3 LTS

[sammyjava]

Thanks for writing this package! I'm getting the following error thrown during compilation under R version 4.3.1 (2023-06-16) on Ubuntu 22.04.3 LTS. Suggestions?

write_sheet_file_.cpp: In function ‘cpp11::r_string write_sheet_file_list_(const string&, const cpp11::list_of<cpp11::data_frame>&, const string&, bool, bool, bool, bool, const string&, const string&)’:
write_sheet_file_.cpp:158:21: error: invalid use of incomplete type ‘struct SEXPREC’
  158 |         write_df(x[i], sheet_names[i], row_names, col_names, na_as_string, padding, xml_file);
      |                     ^
In file included from /usr/lib/R/site-library/cpp11/include/cpp11/R.hpp:13,
                 from /usr/lib/R/site-library/cpp11/include/cpp11.hpp:3,
                 from write_sheet_file_.h:3,
                 from write_sheet_file_.cpp:1:
/usr/share/R/include/Rinternals.h:180:16: note: forward declaration of ‘struct SEXPREC’
  180 | typedef struct SEXPREC *SEXP;
      |                ^~~~~~~
write_sheet_file_.cpp:158:21: error: invalid initialization of reference of type ‘const cpp11::data_frame&’ from expression of type ‘SEXPREC’
  158 |         write_df(x[i], sheet_names[i], row_names, col_names, na_as_string, padding, xml_file);
      |                  ~~~^
write_sheet_file_.cpp:54:40: note: in passing argument 1 of ‘void write_df(const cpp11::data_frame&, const string&, bool, bool, bool, bool, std::ofstream&)’
   54 | void write_df(const cpp11::data_frame& x, const std::string& sheet_name, const bool row_names, const bool col_names,
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~^
make: *** [/usr/lib/R/etc/Makeconf:200: write_sheet_file_.o] Error 1
ERROR: compilation failed for package ‘readODS’
* removing ‘/home/shokin/R/x86_64-pc-linux-gnu-library/4.3/readODS’

The downloaded source packages are in
	‘/tmp/RtmpovBwdw/downloaded_packages’
Warning message:
In install.packages("readODS", repos = "https://ropensci.r-universe.dev") :
  installation of package ‘readODS’ had non-zero exit status

[chainsawriot]

@sammyjava Thank you for your report. I am actually using exactly the same computational environment and I have just tried to run install.packages("readODS", repos = "https://ropensci.r-universe.dev") and it worked. As this problem has been reported previously #174 , I think it could be an issue; and I will try to rewrite write_sheet_file_.cpp:158:21 to at least prevent this irreproducible error. I will give you an update later.

[sammyjava]

Thanks, @chainsawriot ! Sorry I didn't see that closed issue, I should have re-opened it. FWIW, I also got the compile error using install.packages("readODS", repos = "https://ropensci.r-universe.dev") so this is really odd. I'm using the R installed from r-base/jammy-cran40 4.3.1-4.2204.0 all, but since this is a compile error on a cpp file I suppose it's actually the C++ compiler throwing it, which is g++/jammy,now 4:11.2.0-1ubuntu1, perhaps that's a difference?

$ g++ --version
g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0

[chainsawriot]

@sammyjava Could you give this a try: remotes::install_github("ropensci/readODS@tryf180") ? Thank you very much!

[sammyjava]

Thanks! I got the same compile error when I chose to NOT install any of the requested updates, which were:

 4: glue        (1.6.1 -> 1.6.2 ) [CRAN]
 5: utf8        (1.2.2 -> 1.2.4 ) [CRAN]
 6: fansi       (1.0.2 -> 1.0.5 ) [CRAN]
 7: cpp11       (0.4.2 -> 0.4.6 ) [CRAN]
 8: pillar      (1.7.0 -> 1.9.0 ) [CRAN]
 9: magrittr    (2.0.2 -> 2.0.3 ) [CRAN]
10: prettyunits (1.1.1 -> 1.2.0 ) [CRAN]
11: bit         (4.0.4 -> 4.0.5 ) [CRAN]
12: withr       (2.4.3 -> 2.5.2 ) [CRAN]
13: tidyselect  (1.1.2 -> 1.2.0 ) [CRAN]
14: tibble      (3.1.6 -> 3.2.1 ) [CRAN]
15: hms         (1.1.1 -> 1.1.3 ) [CRAN]
16: crayon      (1.5.0 -> 1.5.2 ) [CRAN]
17: stringi     (1.7.6 -> 1.7.12) [CRAN]

I can update one by one to see which one solves the problem if you like. Let me know.

[sammyjava]

Oh, wait, it's a compile error. Shouldn't depend on CRAN package versions. Never mind. :) Or might it?

[sammyjava]

Just in case it'd different, here it is:

g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG  -I'/usr/lib/R/site-library/cpp11/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c write_sheet_file_.cpp -o write_sheet_file_.o
write_sheet_file_.cpp: In function ‘cpp11::r_string write_sheet_file_list_(const string&, const cpp11::list_of<cpp11::data_frame>&, const string&, bool, bool, bool, bool, const string&, const string&)’:
write_sheet_file_.cpp:158:43: error: invalid use of incomplete type ‘struct SEXPREC’
  158 |         cpp11::data_frame current_df = x[i];
      |                                           ^
In file included from /usr/lib/R/site-library/cpp11/include/cpp11/R.hpp:13,
                 from /usr/lib/R/site-library/cpp11/include/cpp11.hpp:3,
                 from write_sheet_file_.h:3,
                 from write_sheet_file_.cpp:1:
/usr/share/R/include/Rinternals.h:180:16: note: forward declaration of ‘struct SEXPREC’
  180 | typedef struct SEXPREC *SEXP;
      |                ^~~~~~~
write_sheet_file_.cpp:158:43: error: conversion from ‘SEXPREC’ to non-scalar type ‘cpp11::data_frame’ requested
  158 |         cpp11::data_frame current_df = x[i];
      |                                        ~~~^
make: *** [/usr/lib/R/etc/Makeconf:200: write_sheet_file_.o] Error 1

[chainsawriot]

@sammyjava It would be much better if you can at least update cpp11; because cpp11 0.4.2 is like 2 years ago.

[sammyjava]

Good eye! Yup, that solved the compile problem, just updating cp11. Thanks!