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fix links in README
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fmichonneau committed Jun 13, 2023
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4 changes: 2 additions & 2 deletions README.Rmd
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Expand Up @@ -10,7 +10,7 @@ opts_knit$set(upload.fun = imgur_upload)

<!-- badges: start -->
[![R-CMD-check](https://github.com/ropensci/rotl/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/rotl/actions/workflows/R-CMD-check.yaml)
[![codecov.io](https://codecov.io/github/ropensci/rotl/coverage.svg?branch=master)](https://codecov.io/github/ropensci/rotl?branch=master)
[![codecov.io](https://app.codecov.io/github/ropensci/rotl?branch=master)](https://app.codecov.io/github/ropensci/rotl?branch=master)
[![](https://www.r-pkg.org/badges/version/rotl)](https://www.r-pkg.org/pkg/rotl)
[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/rotl)](https://www.r-pkg.org/pkg/rotl)
[![](https://badges.ropensci.org/17_status.svg)](https://github.com/ropensci/software-review/issues/17)
Expand All @@ -22,7 +22,7 @@ opts_knit$set(upload.fun = imgur_upload)

`rotl` is an R package to interact with the Open Tree of Life data APIs. It was
initially developed as part of the
[NESCENT/OpenTree/Arbor hackathon](https://blog.opentreeoflife.org/2014/06/11/apply-for-tree-for-all-a-hackathon-to-access-opentree-resources/).
NESCENT/OpenTree/Arbor hackathon.

Client libraries to interact with the Open Tree of Life API also exists for
[Python](https://github.com/OpenTreeOfLife/pyopentree)
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10 changes: 5 additions & 5 deletions README.md
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<!-- badges: start -->

[![R-CMD-check](https://github.com/ropensci/rotl/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/rotl/actions/workflows/R-CMD-check.yaml)
[![codecov.io](https://codecov.io/github/ropensci/rotl/coverage.svg?branch=master)](https://codecov.io/github/ropensci/rotl?branch=master)
[![codecov.io](https://app.codecov.io/github/ropensci/rotl?branch=master)](https://app.codecov.io/github/ropensci/rotl?branch=master)
[![](https://www.r-pkg.org/badges/version/rotl)](https://www.r-pkg.org/pkg/rotl)
[![CRAN RStudio mirror
downloads](https://cranlogs.r-pkg.org/badges/rotl)](https://www.r-pkg.org/pkg/rotl)
Expand All @@ -15,8 +15,8 @@ developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.re
# rotl: An R interface to Open Tree API <img src="man/figures/logo.svg" align="right" />

`rotl` is an R package to interact with the Open Tree of Life data APIs.
It was initially developed as part of the [NESCENT/OpenTree/Arbor
hackathon](https://blog.opentreeoflife.org/2014/06/11/apply-for-tree-for-all-a-hackathon-to-access-opentree-resources/).
It was initially developed as part of the NESCENT/OpenTree/Arbor
hackathon.

Client libraries to interact with the Open Tree of Life API also exists
for [Python](https://github.com/OpenTreeOfLife/pyopentree) and
Expand Down Expand Up @@ -111,7 +111,7 @@ tr <- tol_induced_subtree(ott_ids = ott_id(resolved_names))
plot(tr)
```

![](https://i.imgur.com/RJRnhLf.png)<!-- -->
![](https://i.imgur.com/0tnzsFv.png)<!-- -->

The code above can be summarized in a single pipe:

Expand All @@ -131,7 +131,7 @@ c("Pongo", "Pan", "Gorilla", "Hoolock", "Homo") %>%
## mrcaott83926ott3607689, mrcaott83926ott3607732, mrcaott770295ott3607719,
## mrcaott770295ott3607692, Ponginae ott1082538, Hylobatidae ott166544

![](https://i.imgur.com/6D6QvGM.png)<!-- -->
![](https://i.imgur.com/ww5PZ6B.png)<!-- -->

## Citation and Manuscript

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