Merge pull request #58 from ropensci/fix/cran-n-cores

Fix/CRAN n cores notes

.Rbuildignore

@@ -17,3 +17,4 @@ Makefile
 ^\.github$
 ^CITATION\.cff$
 ^CRAN-SUBMISSION$
+^data-raw$

CITATION.cff

@@ -8,7 +8,7 @@ message: 'To cite package "spatsoc" in publications use:'
 type: software
 license: GPL-3.0-only
 title: 'spatsoc: Group Animal Relocation Data by Spatial and Temporal Relationship'
-version: 0.2.1
+version: 0.2.2
 abstract: Detects spatial and temporal groups in GPS relocations (Robitaille et al.
   (2019) <doi:10.1111/2041-210X.13215>). It can be used to convert GPS relocations
   to gambit-of-the-group format to build proximity-based social networks In addition,

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 0.2.1
-Date: 2023-08-23 13:44:44 UTC
-SHA: e622be89152f83e216955bb7517bfdae813eff94
+Version: 0.2.2
+Date: 2023-09-07 20:22:33 UTC
+SHA: c3ec2a5725d30b8576e48cb0a3e2928def2320cf

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: spatsoc
 Title: Group Animal Relocation Data by Spatial and Temporal Relationship
-Version: 0.2.1
+Version: 0.2.2
 Authors@R: c(
     person("Alec L.", "Robitaille", , "robit.alec@gmail.com", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-4706-1762")),

NEWS.md

@@ -1,3 +1,8 @@
+# v 0.2.2 (2023-09-07)
+
+* fixed CRAN notes about number of cores/parallel process/threads [PR 58](https://github.com/ropensci/spatsoc/pull/58)
+
+
 # v 0.2.1 (2023-08-23)
 
 * fixed CRAN notes [PR 56](https://github.com/ropensci/spatsoc/pull/56)

R/build_lines.R

@@ -60,6 +60,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/build_polys.R

@@ -73,6 +73,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/dyads.R

@@ -22,6 +22,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/edge_dist.R

@@ -64,6 +64,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/edge_nn.R

@@ -65,6 +65,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/extdata.R

@@ -14,6 +14,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/get_gbi.R

@@ -38,6 +38,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/group_lines.R

@@ -92,6 +92,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/group_polys.R

@@ -84,6 +84,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/group_pts.R

@@ -69,6 +69,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/group_times.R

@@ -66,6 +66,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/randomizations.R

@@ -82,6 +82,7 @@
 #' @examples
 #' # Load data.table
 #' library(data.table)
+#' \dontshow{data.table::setDTthreads(1)}
 #'
 #' # Read example data
 #' DT <- fread(system.file("extdata", "DT.csv", package = "spatsoc"))

R/spatsoc.R

@@ -31,7 +31,7 @@
 .onAttach <- function(libname, pkgname) {
   packageStartupMessage(
     'Note: spatsoc has been updated to follow the R-spatial evolution. \n',
-    'Package dependencies and functions have been modified. \n',
+    'Package dependencies and some functions have been modified. \n',
     'Please see the NEWS for details: \n',
     'https://docs.ropensci.org/spatsoc/index.html#news'
   )

codemeta.json

@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/ropensci/spatsoc",
   "issueTracker": "https://github.com/ropensci/spatsoc/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.2.1",
+  "version": "0.2.2",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -190,7 +190,7 @@
     },
     "SystemRequirements": "GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>= 4.8.0),\n    sqlite3"
   },
-  "fileSize": "1493.18KB",
+  "fileSize": "1868.342KB",
   "citation": [
     {
       "@type": "ScholarlyArticle",

data-raw/DT_predator.R

@@ -0,0 +1,10 @@
+library(data.table)
+DT <- fread('inst/extdata/DT.csv')
+
+DT_predator <- DT[ID %in% LETTERS[seq.int(2)]][sample(.N, 100)]
+
+DT_predator[, c('X', 'Y') := .(X + 1e4, Y - 5e4)]
+DT_predator[, type := 'predator']
+
+# usethis::use_data(DT_predator, overwrite = TRUE)
+fwrite(DT_predator, 'inst/extdata/DT_predator.csv')

data-raw/DT_prey.R

@@ -0,0 +1,10 @@
+library(data.table)
+DT <- fread('inst/extdata/DT.csv')
+
+DT_prey <- DT[ID %in% LETTERS[seq(4, 7)]]
+
+DT_prey[, c('X', 'Y') := .(X + 1e4, Y - 5e4)]
+DT_prey[, type := 'prey']
+
+# usethis::use_data(DT_prey, overwrite = TRUE)
+fwrite(DT_prey, 'inst/extdata/DT_prey.csv')

inst/extdata/DT_predator.csv

@@ -0,0 +1,101 @@
+ID,X,Y,datetime,population,type
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