Deduplicate section #3479
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: [push, pull_request] | |
| name: cover | |
| jobs: | |
| cover: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| TAR_NOT_CRAN: true | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: false | |
| TORCH_INSTALL: 1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Linux system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libglpk-dev libglpk40 libmbedtls-dev libzmq3-dev | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Add r-universe to repos | |
| run: | | |
| cat("\noptions(repos=c(shikokuchuo='https://shikokuchuo.r-universe.dev',CRAN ='https://cloud.r-project.org'))\n", file = "~/.Rprofile", append = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr, any::arrow | |
| needs: coverage | |
| cache-version: 2 | |
| - name: Install arrow | |
| shell: Rscript {0} | |
| run: arrow::install_arrow() | |
| - name: Install torch | |
| shell: Rscript {0} | |
| run: torch::install_torch() | |
| - name: Test coverage | |
| run: | | |
| covr::codecov( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | |
| ) | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |