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fixed class2tree test
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sckott committed Mar 2, 2015
1 parent dae2f16 commit b0c86e6
Showing 1 changed file with 6 additions and 1 deletion.
7 changes: 6 additions & 1 deletion tests/testthat/test-class2tree.R
@@ -1,7 +1,12 @@
# tests for class2tree fxn in taxize
context("class2tree")

spnames <- c('Physoplexis comosa','Nidorella zavattarii','Centaurea musimomum','Portulaca striata','Cerastium candidissimum','Faramea bicolor','Garrya salicifolia','Clerodendrum curranii','Campanula khorasanica','Micropholis gardneriana','Manilkara excelsa','Fimbristylis alboviridis','Sideritis montana','Polianthes longiflora')
spnames <- c('Klattia flava', 'Trollius sibiricus', 'Arachis paraguariensis',
'Tanacetum boreale', 'Gentiana yakushimensis','Sesamum schinzianum',
'Pilea verrucosa','Tibouchina striphnocalyx','Lycium dasystemum',
'Schoenus centralis','Berkheya echinacea','Androcymbium villosum',
'Helianthus annuus','Madia elegans','Lupinus albicaulis','Poa annua',
'Pinus lambertiana')
out <- classification(spnames, db='ncbi', verbose=FALSE)
out <- out[!is.na(out)]
tr <- class2tree(out)
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