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sckott committed Apr 24, 2015
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5 changes: 3 additions & 2 deletions README.Rmd
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```{r echo=FALSE}
knitr::opts_chunk$set(
warning = FALSE,
warning = FALSE,
message = FALSE,
collapse = TRUE,
comment = "#>"
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[![Build Status](https://api.travis-ci.org/ropensci/taxize.png?branch=master)](https://travis-ci.org/ropensci/taxize)
[![Build status](https://ci.appveyor.com/api/projects/status/6mgc02mkd8j4sq3g/branch/master)](https://ci.appveyor.com/project/sckott/taxize-175/branch/master)
[![Coverage Status](https://coveralls.io/repos/ropensci/taxize/badge.svg)](https://coveralls.io/r/ropensci/taxize)
[![rstudio mirror downloads](http://cranlogs-dev.r-pkg.org/badges/taxize)](https://github.com/metacran/cranlogs.app)

`taxize` allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information - among other things.

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### Get unique taxonomic identifier from NCBI

Alot of `taxize` revolves around taxonomic identifiers. Because, as you know, names can be a mess (misspelled, synonyms, etc.), it's better to get an identifier that a particular data sources knows about, then we can move forth acquiring more fun taxonomic data.
Alot of `taxize` revolves around taxonomic identifiers. Because, as you know, names can be a mess (misspelled, synonyms, etc.), it's better to get an identifier that a particular data sources knows about, then we can move forth acquiring more fun taxonomic data.

```{r}
uids <- get_uid(c("Chironomus riparius", "Chaetopteryx"))
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -7,6 +7,7 @@ taxize
[![Build Status](https://api.travis-ci.org/ropensci/taxize.png?branch=master)](https://travis-ci.org/ropensci/taxize)
[![Build status](https://ci.appveyor.com/api/projects/status/6mgc02mkd8j4sq3g/branch/master)](https://ci.appveyor.com/project/sckott/taxize-175/branch/master)
[![Coverage Status](https://coveralls.io/repos/ropensci/taxize/badge.svg)](https://coveralls.io/r/ropensci/taxize)
[![rstudio mirror downloads](http://cranlogs-dev.r-pkg.org/badges/taxize)](https://github.com/metacran/cranlogs.app)

`taxize` allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information - among other things.

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