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Links updated to the ropensci version
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kamapu committed Oct 2, 2020
1 parent eae874a commit d962046
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Showing 13 changed files with 20 additions and 20 deletions.
2 changes: 1 addition & 1 deletion .Rbuildignore
Expand Up @@ -7,7 +7,7 @@
^codecov\.yml$
^cran-comments\.md$
^data-raw$
^built-pkg$
^build-pkg$
^README-figures$
^README\.Rmd$
^CODE_OF_CONDUCT\.md$
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2 changes: 1 addition & 1 deletion .github/CONTRIBUTING.md
Expand Up @@ -11,7 +11,7 @@ the GitHub web interface, so long as the changes are made in the _source_ file.
### Prerequisites

Before you make a substantial pull request, you should always file an issue at
the packages [BugReports](https://github.com/kamapu/taxlist/issues)
the packages [BugReports](https://github.com/ropensci/taxlist/issues)
and make sure someone from the team agrees that it’s a problem. If you’ve found
a bug, create an associated issue and illustrate the bug with a minimal
[reprex](https://www.tidyverse.org/help/#reprex).
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4 changes: 2 additions & 2 deletions DESCRIPTION
Expand Up @@ -37,8 +37,8 @@ License: GPL (>= 2)
Roxygen: list(markdown = TRUE)
URL:
https://cran.r-project.org/package=taxlist,
https://github.com/kamapu/taxlist
BugReports: https://github.com/kamapu/taxlist/issues
https://github.com/ropensci/taxlist
BugReports: https://github.com/ropensci/taxlist/issues
Collate:
'imports.R'
'internal.R'
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10 changes: 5 additions & 5 deletions README.Rmd
Expand Up @@ -22,8 +22,8 @@ knitr::opts_chunk$set(
[![Rdoc](http://www.rdocumentation.org/badges/version/taxlist)](http://www.rdocumentation.org/packages/taxlist)
[![](https://badges.ropensci.org/233_status.svg)](https://github.com/ropensci/software-review/issues/233)
<br>
[![Travis Build Status](https://travis-ci.org/kamapu/taxlist.svg?branch=master)](https://travis-ci.org/kamapu/taxlist)
[![codecov](https://codecov.io/gh/kamapu/taxlist/branch/master/graph/badge.svg)](https://codecov.io/gh/kamapu/taxlist)
[![Travis Build Status](https://travis-ci.org/ropensci/taxlist.svg?branch=master)](https://travis-ci.org/ropensci/taxlist)
[![codecov](https://codecov.io/gh/ropensci/taxlist/branch/master/graph/badge.svg)](https://codecov.io/gh/ropensci/taxlist)
<br>
[![CRAN_downloads](http://cranlogs.r-pkg.org/badges/taxlist)](https://cran.r-project.org/package=taxlist)
[![total downloads](http://cranlogs.r-pkg.org/badges/grand-total/taxlist)](https://cran.r-project.org/package=taxlist)
Expand All @@ -36,7 +36,7 @@ knitr::opts_chunk$set(
providing an object class and functions in `S4` language.
The homonymous object class `taxlist` was originally designed as a module for
taxa recorded in vegetation-plot observations (see
[`vegtable`](https://github.com/kamapu/vegtable)), but became as an independent
[`vegtable`](https://github.com/ropensci/vegtable)), but became as an independent
object with the ability of contain not only lists of species but also synonymy,
hierarchical taxonomy, and functional traits (attributes of taxa).

Expand Down Expand Up @@ -80,12 +80,12 @@ install.packages("taxlist", dependencies=TRUE)
```

Alternatively, the current development version is available from
[GitHub](https://github.com/kamapu/taxlist) and can be installed using the
[GitHub](https://github.com/ropensci/taxlist) and can be installed using the
package `devtools`:

```{r, eval=FALSE}
library(devtools)
install_github("kamapu/taxlist", build_vignette=TRUE)
install_github("ropensci/taxlist", build_vignette=TRUE)
```

A vignette is installed with this package introducing to the work with
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10 changes: 5 additions & 5 deletions README.md
Expand Up @@ -11,8 +11,8 @@
[![Rdoc](http://www.rdocumentation.org/badges/version/taxlist)](http://www.rdocumentation.org/packages/taxlist)
[![](https://badges.ropensci.org/233_status.svg)](https://github.com/ropensci/software-review/issues/233)
<br> [![Travis Build
Status](https://travis-ci.org/kamapu/taxlist.svg?branch=master)](https://travis-ci.org/kamapu/taxlist)
[![codecov](https://codecov.io/gh/kamapu/taxlist/branch/master/graph/badge.svg)](https://codecov.io/gh/kamapu/taxlist)
Status](https://travis-ci.org/ropensci/taxlist.svg?branch=master)](https://travis-ci.org/ropensci/taxlist)
[![codecov](https://codecov.io/gh/ropensci/taxlist/branch/master/graph/badge.svg)](https://codecov.io/gh/ropensci/taxlist)
<br>
[![CRAN\_downloads](http://cranlogs.r-pkg.org/badges/taxlist)](https://cran.r-project.org/package=taxlist)
[![total
Expand All @@ -26,7 +26,7 @@ downloads](http://cranlogs.r-pkg.org/badges/grand-total/taxlist)](https://cran.r
**R**, providing an object class and functions in `S4` language. The
homonymous object class `taxlist` was originally designed as a module
for taxa recorded in vegetation-plot observations (see
[`vegtable`](https://github.com/kamapu/vegtable)), but became as an
[`vegtable`](https://github.com/ropensci/vegtable)), but became as an
independent object with the ability of contain not only lists of species
but also synonymy, hierarchical taxonomy, and functional traits
(attributes of taxa).
Expand Down Expand Up @@ -71,12 +71,12 @@ install.packages("taxlist", dependencies=TRUE)
```

Alternatively, the current development version is available from
[GitHub](https://github.com/kamapu/taxlist) and can be installed using
[GitHub](https://github.com/ropensci/taxlist) and can be installed using
the package `devtools`:

``` r
library(devtools)
install_github("kamapu/taxlist", build_vignette=TRUE)
install_github("ropensci/taxlist", build_vignette=TRUE)
```

A vignette is installed with this package introducing to the work with
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2 changes: 1 addition & 1 deletion data-raw/0_check.R → build-pkg/build_n_check.R
Expand Up @@ -30,7 +30,7 @@ purl("vignettes/taxlist-intro.Rmd", "vignettes/taxlist-intro.R")
gp()

# Build package
pkg_loc <- build(path="built-pkg")
pkg_loc <- build(path="build-pkg")

# Test the package
## Sys.setenv(LANG="en_US.iso88591")
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6 changes: 3 additions & 3 deletions vignettes/taxlist-intro.R
@@ -1,6 +1,6 @@
## ----install_github, eval=FALSE-----------------------------------------------
## library(devtools)
## install_github("kamapu/taxlist", build_vignettes=TRUE)
## install_github("ropensci/taxlist", build_vignettes=TRUE)


## ----install_cran, eval=FALSE-------------------------------------------------
Expand All @@ -16,7 +16,7 @@ library(taxlist)


## ----load_example_table-------------------------------------------------------
load(url("https://github.com/kamapu/thisdataismine/raw/master/data/Cross.rda"))
load(url("https://github.com/ropensci/thisdataismine/raw/master/data/Cross.rda"))


## ----head_example-------------------------------------------------------------
Expand Down Expand Up @@ -69,7 +69,7 @@ summary(Papyrus, "all")


## ----load_syntax--------------------------------------------------------------
load(url("https://github.com/kamapu/Guides/raw/master/data/wetlands_syntax.rda"))
load(url("https://github.com/ropensci/Guides/raw/master/data/wetlands_syntax.rda"))


## ----prototype----------------------------------------------------------------
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4 changes: 2 additions & 2 deletions vignettes/taxlist-intro.Rmd
Expand Up @@ -18,12 +18,12 @@ The homonymous object class `taxlist` can be further linked to biodiversity
records (e.g. for observations in vegetation plots).

The `taxlist` package is developed on the repository **GitHub**
([https://github.com/kamapu/taxlist](https://github.com/kamapu/taxlist)) and can
([https://github.com/ropensci/taxlist](https://github.com/ropensci/taxlist)) and can
be installed in your R-session using the package `devtools`:

```{r install_github, eval=FALSE}
library(devtools)
install_github("kamapu/taxlist", build_vignettes=TRUE)
install_github("ropensci/taxlist", build_vignettes=TRUE)
```

Since this package is already available in the Comprehensive R Archive Network
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