BCM Screen Processing

Reimplementation of (FastQ -> Counts in replicates -> Analysis of CRISPR data)

Preview

Installation

To run the python application in development mode, clone or download the folder and run:

  pdm install
  pdm run core.py

Feature Pipelines

To be updated after first public release

Acknowledgements

• Baylor College of Medicine HNC

Max A Horlbeck, Luke A Gilbert, Jacqueline E Villalta, Britt Adamson, Ryan A Pak, Yuwen Chen, Alexander P Fields, Chong Yon Park, Jacob E Corn, Martin Kampmann, Jonathan S Weissman (2016) Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation eLife 5:e19760