Runnable R script derived from submission manuscript August 2020. Run time 9-12 hours, 16GB RAM required. Very recent INLA version required to extract DIC in these cases.
R version 4.0.2 (2020-06-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Fedora 32 (Workstation Edition)
Matrix products: default
BLAS: /home/rsb/topics/R/R402-share/lib64/R/lib/libRblas.so
LAPACK: /home/rsb/topics/R/R402-share/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] ProbitSpatial_1.0 speedglm_0.3-2 MASS_7.3-52
[4] Rcpp_1.0.5 spatialreg_1.1-6 spBayesSurv_1.1.4
[7] INLA_20.08.11-1 foreach_1.5.0 ggfortify_0.4.10
[10] ggplot2_3.3.2 zoo_1.8-8 survival_3.2-3
[13] car_3.0-9 carData_3.0-4 mapview_2.9.1
[16] xtable_1.8-4 spatialprobit_0.9-11 tmvtnorm_1.4-10
[19] gmm_1.6-5 sandwich_2.5-1 mvtnorm_1.1-1
[22] spdep_1.1-5 sf_0.9-6 spData_0.3.8
[25] sp_1.4-4 Matrix_1.2-18
loaded via a namespace (and not attached):
[1] nlme_3.1-148 satellite_1.0.2 webshot_0.5.2
[4] gmodels_2.18.1 numDeriv_2016.8-1.1 Deriv_4.0
[7] tools_4.0.2 R6_2.4.1 KernSmooth_2.23-17
[10] DBI_1.1.0 colorspace_1.4-1 raster_3.3-13
[13] withr_2.2.0 tidyselect_1.1.0 gridExtra_2.3
[16] leaflet_2.0.3 curl_4.3 compiler_4.0.2
[19] leafem_0.1.3 expm_0.999-5 labeling_0.3
[22] scales_1.1.1 classInt_0.4-3 systemfonts_0.2.3
[25] stringr_1.4.0 digest_0.6.25 foreign_0.8-80
[28] svglite_1.2.3.2 rio_0.5.16 base64enc_0.1-3
[31] pkgconfig_2.0.3 htmltools_0.5.0 htmlwidgets_1.5.1
[34] rlang_0.4.7 readxl_1.3.1 farver_2.0.3
[37] generics_0.0.2 jsonlite_1.7.0 crosstalk_1.1.0.1
[40] gtools_3.8.2 dplyr_1.0.2 zip_2.1.0
[43] magrittr_1.5 munsell_0.5.0 abind_1.4-5
[46] gdtools_0.2.2 lifecycle_0.2.0 stringi_1.4.6
[49] yaml_2.2.1 grid_4.0.2 gdata_2.18.0
[52] forcats_0.5.0 crayon_1.3.4 deldir_0.1-28
[55] lattice_0.20-41 haven_2.3.1 splines_4.0.2
[58] hms_0.5.3 leafpop_0.0.5 pillar_1.4.6
[61] uuid_0.1-4 boot_1.3-25 codetools_0.2-16
[64] LearnBayes_2.15.1 glue_1.4.1 leaflet.providers_1.9.0
[67] data.table_1.13.0 png_0.1-7 vctrs_0.3.2
[70] MatrixModels_0.4-1 cellranger_1.1.0 RANN_2.6.1
[73] gtable_0.3.0 purrr_0.3.4 tidyr_1.1.1
[76] openxlsx_4.1.5 e1071_1.7-3 coda_0.19-3
[79] class_7.3-17 tibble_3.0.3 iterators_1.0.12
[82] units_0.6-7 ellipsis_0.3.1 brew_1.0-6
[85] spDataLarge_0.4.1