streamlined

rscherrer · Jun 8, 2021 · e2db7b4 · e2db7b4
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commit e2db7b4
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Showing 94 changed files with 1 addition and 3,689 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,61 +1,17 @@
 # Generated by roxygen2: do not edit by hand
 
 export("%>%")
-export(add_chromosomes)
 export(as_tibble_speciome)
-export(collect_param)
-export(combine_data)
-export(fetch_dirs)
-export(find_edge)
-export(find_extant)
-export(find_partners)
-export(get_chromosomes)
-export(get_degrees)
-export(give_edges_coordinates)
-export(guess_nedges)
-export(guess_nloci)
-export(guess_nrows)
 export(interpret_variable_names)
-export(is_complete)
-export(is_extant)
-export(is_extinct)
-export(is_missing)
-export(pivot_data)
-export(plot_genome_distributions)
-export(plot_genome_heatmap)
-export(plot_genome_network)
-export(plot_genome_scan)
-export(plot_genome_scatter)
-export(plot_genome_trajectories)
-export(plot_trait_values)
-export(read_arch)
-export(read_arch_file)
-export(read_arch_genome)
-export(read_arch_network)
 export(read_architecture)
 export(read_binary)
 export(read_bitset)
-export(read_data)
 export(read_edges)
-export(read_genome)
-export(read_indiv_loci)
 export(read_individual_genomes)
 export(read_individuals)
 export(read_loci)
-export(read_network)
-export(read_param)
-export(read_param_file)
 export(read_parameters)
-export(read_pedigree)
-export(read_pop)
 export(read_population)
-export(read_sim)
-export(read_slurm_status)
 export(read_speciome)
-export(read_this)
-export(rename_str)
 export(rm_plural_colnames)
-export(set_param_file)
-export(smoothen_data)
-export(trait_colors)
 importFrom(magrittr,"%>%")
diff --git a/R/add_chromosomes.R b/R/add_chromosomes.R
diff --git a/R/collect_param.R b/R/collect_param.R
diff --git a/R/combine_data.R b/R/combine_data.R
diff --git a/R/fetch_dirs.R b/R/fetch_dirs.R
diff --git a/R/find_edge.R b/R/find_edge.R
diff --git a/R/find_extant.R b/R/find_extant.R
diff --git a/R/find_partners.R b/R/find_partners.R
diff --git a/R/get_chromosomes.R b/R/get_chromosomes.R
diff --git a/R/get_degrees.R b/R/get_degrees.R