build snakemake with mamba (#32)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>

snakemake/mamba/Dockerfile

@@ -0,0 +1,24 @@
+ARG tag=mamba
+FROM ghcr.io/rse-ops/flux-conda:${tag}
+LABEL org.opencontainers.image.authors="@vsoch"
+
+# Mamba + snakemake base for the Flux Operator
+
+USER root
+ENV LANG C.UTF-8
+ENV SHELL /bin/bash
+
+RUN apt-get update
+RUN DEBIAN_FRONTEND="noninteractive" apt-get -y install \
+    wget curl bzip2 ca-certificates gnupg2 squashfs-tools git \
+    && apt-get clean \
+    && apt-get autoremove \
+    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+RUN mamba install -c bioconda -c conda-forge snakemake snakemake-minimal && \
+    mamba install -q -y -c conda-forge singularity && \
+    conda clean --all -y && \
+    which python && \
+    pip install .[reports,messaging,google-cloud]
+
+WORKDIR /workflow

snakemake/mamba/uptodate.yaml

@@ -0,0 +1,7 @@
+dockerbuild:
+
+  build_args:
+    tag:
+      key: app
+      versions:
+       - mamba