Automated deployment to update software database 2022-11-02 (#43)

Co-authored-by: github-actions <github-actions@users.noreply.github.com>

_data/language_counts.json

@@ -1,25 +1,25 @@
 {
-    "unknown": 124,
-    "Python": 1662,
-    "Jupyter Notebook": 313,
+    "unknown": 127,
+    "Python": 1675,
+    "Jupyter Notebook": 314,
     "Modelica": 1,
     "Shell": 24,
-    "HTML": 66,
+    "HTML": 67,
     "Perl": 43,
-    "R": 567,
-    "C++": 455,
-    "Java": 92,
-    "C": 286,
+    "R": 569,
+    "C++": 458,
+    "Java": 93,
+    "C": 287,
     "Rust": 17,
     "JavaScript": 74,
     "AMPL": 1,
     "MATLAB": 36,
     "Haskell": 1,
-    "Fortran": 122,
+    "Fortran": 124,
     "Clojure": 4,
     "Groovy": 5,
     "E": 1,
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     "null": 16,
     "Matlab": 10,
     "Scala": 7,
@@ -32,7 +32,7 @@
     "Kotlin": 2,
     "Go": 22,
     "PostScript": 3,
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+    "Nextflow": 7,
     "CSS": 4,
     "NCL": 1,
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_data/repos.json

@@ -15619,7 +15619,116 @@
         "github/kwkx/IPRP": [],
         "github/SDXorg/pysd": [],
         "github/cagrikymk/JAX-ReaxFF": [],
-        "github/justinmathias/isocalcR": []
+        "github/justinmathias/isocalcR": [],
+        "gitlab/aegge/comet-emu": [],
+        "github/jolie/tquery": [
+            "jolie",
+            "microservices",
+            "data-handling",
+            "ephemeral"
+        ],
+        "github/pedro-acunha/SHEEP": [
+            "astronomy",
+            "astronomy-software",
+            "classification",
+            "machine-learning",
+            "photometric-redshifts",
+            "photometry"
+        ],
+        "github/jmejia8/Metaheuristics.jl": [
+            "optimization",
+            "multi-objective-optimization",
+            "differential-evolution",
+            "simulated-annealing",
+            "pso",
+            "nsga2",
+            "constrained-optimization",
+            "hypervolume",
+            "decision-making"
+        ],
+        "github/korcsmarosgroup/TFlink": [],
+        "github/ExObsSim/ExoRad2-public": [],
+        "github/tessgi/tvguide": [],
+        "github/jgieseler/solarmach": [
+            "esa",
+            "heliophysics",
+            "spacephysics",
+            "spaceweather"
+        ],
+        "github/facebookresearch/faiss": [],
+        "github/gbernstein/pixmappy": [],
+        "github/gbernstein/gbdes": [],
+        "github/jfowkes/pycutest": [
+            "optimization-tools"
+        ],
+        "github/prioritizr/wdpar": [
+            "r",
+            "conservation",
+            "data",
+            "spatial",
+            "database",
+            "biodiversity",
+            "protected-areas",
+            "cran",
+            "r-package",
+            "rstats"
+        ],
+        "github/DeepMIALab/UC-NfNet": [],
+        "github/cvbuchem/LavAtmos": [],
+        "github/haiyang1986/TVAR": [],
+        "github/lanl/scico": [
+            "computational-imaging",
+            "inverse-problems",
+            "optimization",
+            "admm",
+            "fista",
+            "total-variation",
+            "plug-and-play-priors",
+            "jax",
+            "convex-optimization",
+            "proximal-algorithms",
+            "proximal-operators"
+        ],
+        "github/riatelab/osrm": [
+            "osrm",
+            "travel",
+            "openstreetmap",
+            "r",
+            "cran",
+            "shortest-paths",
+            "r-package"
+        ],
+        "github/AWehrhahn/SME": [
+            "astronomy",
+            "spectroscopy",
+            "modelling"
+        ],
+        "github/AFD-Illinois/iharm3d": [],
+        "github/nemesiscode/radtrancode": [],
+        "github/fkiwy/Finder_charts": [],
+        "github/bcgsc/TMBur": [],
+        "github/c-white/blacklight": [],
+        "github/CNIC-Proteomics/TurboPutative-web": [
+            "metabolomics",
+            "lc-ms",
+            "untargeted-metabolomics",
+            "data-processing"
+        ],
+        "github/NiallJeffrey/BornRaytrace": [],
+        "github/lucabaldini/ixpeobssim": [
+            "astronomy",
+            "polarimetry",
+            "python",
+            "x-ray",
+            "ixpe"
+        ],
+        "github/CosmoStat/mccd": [
+            "python"
+        ],
+        "github/wiederm/transformato": [
+            "charmm-gui",
+            "free-energy-calculations"
+        ]
     },
     "language": {
         "gitlab/chiemotono/mdcontactcom": "unknown",
@@ -19865,7 +19974,36 @@
         "github/kwkx/IPRP": "Perl",
         "github/SDXorg/pysd": "Python",
         "github/cagrikymk/JAX-ReaxFF": "Python",
-        "github/justinmathias/isocalcR": "R"
+        "github/justinmathias/isocalcR": "R",
+        "gitlab/aegge/comet-emu": "unknown",
+        "github/jolie/tquery": "Java",
+        "github/pedro-acunha/SHEEP": "Python",
+        "github/jmejia8/Metaheuristics.jl": "Julia",
+        "github/korcsmarosgroup/TFlink": "unknown",
+        "github/ExObsSim/ExoRad2-public": "Python",
+        "github/tessgi/tvguide": "Fortran",
+        "github/jgieseler/solarmach": "Python",
+        "github/facebookresearch/faiss": "C++",
+        "github/gbernstein/pixmappy": "Python",
+        "github/gbernstein/gbdes": "C++",
+        "github/jfowkes/pycutest": "Python",
+        "github/prioritizr/wdpar": "R",
+        "github/DeepMIALab/UC-NfNet": "unknown",
+        "github/cvbuchem/LavAtmos": "Jupyter Notebook",
+        "github/haiyang1986/TVAR": "Python",
+        "github/lanl/scico": "Python",
+        "github/riatelab/osrm": "R",
+        "github/AWehrhahn/SME": "Python",
+        "github/AFD-Illinois/iharm3d": "C",
+        "github/nemesiscode/radtrancode": "Fortran",
+        "github/fkiwy/Finder_charts": "Python",
+        "github/bcgsc/TMBur": "Nextflow",
+        "github/c-white/blacklight": "C++",
+        "github/CNIC-Proteomics/TurboPutative-web": "HTML",
+        "github/NiallJeffrey/BornRaytrace": "Python",
+        "github/lucabaldini/ixpeobssim": "Python",
+        "github/CosmoStat/mccd": "Python",
+        "github/wiederm/transformato": "Python"
     },
     "url": {
         "gitlab/chiemotono/mdcontactcom": "https://gitlab.com/chiemotono/mdcontactcom",
@@ -24111,7 +24249,36 @@
         "github/kwkx/IPRP": "https://github.com/kwkx/IPRP",
         "github/SDXorg/pysd": "https://github.com/SDXorg/pysd",
         "github/cagrikymk/JAX-ReaxFF": "https://github.com/cagrikymk/JAX-ReaxFF",
-        "github/justinmathias/isocalcR": "https://github.com/justinmathias/isocalcR"
+        "github/justinmathias/isocalcR": "https://github.com/justinmathias/isocalcR",
+        "gitlab/aegge/comet-emu": "https://gitlab.com/aegge/comet-emu",
+        "github/jolie/tquery": "https://github.com/jolie/tquery",
+        "github/pedro-acunha/SHEEP": "https://github.com/pedro-acunha/SHEEP",
+        "github/jmejia8/Metaheuristics.jl": "https://github.com/jmejia8/Metaheuristics.jl",
+        "github/korcsmarosgroup/TFlink": "https://github.com/korcsmarosgroup/TFlink",
+        "github/ExObsSim/ExoRad2-public": "https://github.com/ExObsSim/ExoRad2-public",
+        "github/tessgi/tvguide": "https://github.com/tessgi/tvguide",
+        "github/jgieseler/solarmach": "https://github.com/jgieseler/solarmach",
+        "github/facebookresearch/faiss": "https://github.com/facebookresearch/faiss",
+        "github/gbernstein/pixmappy": "https://github.com/gbernstein/pixmappy",
+        "github/gbernstein/gbdes": "https://github.com/gbernstein/gbdes",
+        "github/jfowkes/pycutest": "https://github.com/jfowkes/pycutest",
+        "github/prioritizr/wdpar": "https://github.com/prioritizr/wdpar",
+        "github/DeepMIALab/UC-NfNet": "https://github.com/DeepMIALab/UC-NfNet",
+        "github/cvbuchem/LavAtmos": "https://github.com/cvbuchem/LavAtmos",
+        "github/haiyang1986/TVAR": "https://github.com/haiyang1986/TVAR",
+        "github/lanl/scico": "https://github.com/lanl/scico",
+        "github/riatelab/osrm": "https://github.com/riatelab/osrm",
+        "github/AWehrhahn/SME": "https://github.com/AWehrhahn/SME",
+        "github/AFD-Illinois/iharm3d": "https://github.com/AFD-Illinois/iharm3d",
+        "github/nemesiscode/radtrancode": "https://github.com/nemesiscode/radtrancode",
+        "github/fkiwy/Finder_charts": "https://github.com/fkiwy/Finder_charts",
+        "github/bcgsc/TMBur": "https://github.com/bcgsc/TMBur",
+        "github/c-white/blacklight": "https://github.com/c-white/blacklight",
+        "github/CNIC-Proteomics/TurboPutative-web": "https://github.com/CNIC-Proteomics/TurboPutative-web",
+        "github/NiallJeffrey/BornRaytrace": "https://github.com/NiallJeffrey/BornRaytrace",
+        "github/lucabaldini/ixpeobssim": "https://github.com/lucabaldini/ixpeobssim",
+        "github/CosmoStat/mccd": "https://github.com/CosmoStat/mccd",
+        "github/wiederm/transformato": "https://github.com/wiederm/transformato"
     },
     "description": {
         "gitlab/chiemotono/mdcontactcom": "",
@@ -28357,6 +28524,35 @@
         "github/kwkx/IPRP": "The implement of IPRP and related nomograms.",
         "github/SDXorg/pysd": "System Dynamics Modeling in Python",
         "github/cagrikymk/JAX-ReaxFF": "JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields",
-        "github/justinmathias/isocalcR": "R Package containing widely used isotope theory functions"
+        "github/justinmathias/isocalcR": "R Package containing widely used isotope theory functions",
+        "gitlab/aegge/comet-emu": null,
+        "github/jolie/tquery": "A data-query framework based on a sound variant of the MongoDB aggregation framework",
+        "github/pedro-acunha/SHEEP": "Machine Learning pipeline to classify astronomical sources into galaxies, quasars and stars using photometric data.",
+        "github/jmejia8/Metaheuristics.jl": "High-performance metaheuristics for optimization coded purely in Julia.",
+        "github/korcsmarosgroup/TFlink": "Repository for the TFlink.net website.",
+        "github/ExObsSim/ExoRad2-public": "ExoRad, the generic point source radiometric model.",
+        "github/tessgi/tvguide": "A tool for determining whether stars and galaxies are observable by TESS.",
+        "github/jgieseler/solarmach": "Python package of the multi-spacecraft longitudinal configuration plotter Solar-MACH",
+        "github/facebookresearch/faiss": "A library for efficient similarity search and clustering of dense vectors.",
+        "github/gbernstein/pixmappy": "Python interface to gbdes pixel map (astrometry) solutions",
+        "github/gbernstein/gbdes": "Gary's DES instrumental signature removal / fitting programs",
+        "github/jfowkes/pycutest": "Python interface to CUTEst",
+        "github/prioritizr/wdpar": "Interface to the World Database on Protected Areas",
+        "github/DeepMIALab/UC-NfNet": null,
+        "github/cvbuchem/LavAtmos": "This code performs gas-melt equilibrium calculations for a given temperature and melt composition.",
+        "github/haiyang1986/TVAR": "a deep learning approach for assessing tissue-specific functional effects of non-coding variants",
+        "github/lanl/scico": "Scientific Computational Imaging COde",
+        "github/riatelab/osrm": "Shortest Paths and Travel Time from OpenStreetMap with R",
+        "github/AWehrhahn/SME": "Spectroscopy Made Easy",
+        "github/AFD-Illinois/iharm3d": "Hybrid MPI/OpenMP 3D HARM with vectorization",
+        "github/nemesiscode/radtrancode": "This is the repository of the NEMESIS/RADTRANS project. It is described on the associated web page listed here.",
+        "github/fkiwy/Finder_charts": "A Python module to create finder charts from image data of various sky surveys",
+        "github/bcgsc/TMBur": "Derive TMB estimates from whole genome fastq files.    Runs alignment and variant calling before reporting a variety of TMB estimates",
+        "github/c-white/blacklight": "GR ray tracing code for post-processing Athena++ simulations",
+        "github/CNIC-Proteomics/TurboPutative-web": null,
+        "github/NiallJeffrey/BornRaytrace": "BornRaytrace: simulating weak gravitational lensing effects",
+        "github/lucabaldini/ixpeobssim": "Simulation and analysis framework for the Imaging X-ray Polarimetry Explorer",
+        "github/CosmoStat/mccd": "Multi-CCD data-driven PSF modelling",
+        "github/wiederm/transformato": "Set up relative free energy calculations using a common scaffold"
     }
 }

_data/repos_counts_languages.json

@@ -1,7 +1,7 @@
 {
-    "Python": 4672,
-    "R": 2065,
+    "Python": 4685,
+    "R": 2071,
     "Cpp": 371,
-    "Js": 1387,
+    "Js": 1434,
     "Go": 245
 }

_data/stats.json

@@ -1,9 +1,9 @@
 {
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+    "python_deps": 3845,
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-    "total_repos": 4243,
-    "total_parsed": 2208
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_repos/github/AWehrhahn/SME/README.md

@@ -0,0 +1,46 @@
+---
+title: github/AWehrhahn/SME
+layout: repo
+tipue_search_active: true
+exclude_from_search: true
+---
+# Software Credit
+
+|Manager|Name|Credit|
+|-------|----|------|
+|pypi|[pytest](https://docs.pytest.org/en/latest/)|0.077|
+|pypi|[pandas](https://pandas.pydata.org)|0.062|
+|pypi|[scipy](https://scipy.org/)|0.062|
+|pypi|[numpy](https://www.numpy.org)|0.062|
+|pypi|[astropy](http://astropy.org)|0.062|
+|pypi|[wget](http://bitbucket.org/techtonik/python-wget/)|0.062|
+|pypi|[tqdm](https://tqdm.github.io)|0.062|
+|pypi|[colorlog](https://github.com/borntyping/python-colorlog)|0.062|
+|pypi|[emcee](https://emcee.readthedocs.io)|0.062|
+|pypi|[flex-format](https://github.com/AWehrhahn/flex-format)|0.062|
+|pypi|[plotly](https://plotly.com/python/)|0.062|
+|pypi|[matplotlib](https://matplotlib.org)|0.062|
+|pypi|[pre-commit](https://github.com/pre-commit/pre-commit)|0.062|
+|pypi|[sphinx](https://www.sphinx-doc.org/)|0.062|
+|pypi|[six](https://github.com/benjaminp/six)|0.03|
+|pypi|[PyYAML](https://pyyaml.org/)|0.015|
+|pypi|[PySocks](https://github.com/Anorov/PySocks)|0.011|
+|pypi|[certifi](https://certifiio.readthedocs.io/en/latest/)|0.011|
+|pypi|[idna](https://github.com/kjd/idna)|0.011|
+|pypi|[chardet](https://github.com/chardet/chardet)|0.01|
+|pypi|[charset-normalizer](https://github.com/Ousret/charset_normalizer)|0.01|
+|requirements.txt|github/AWehrhahn/SME|0.01|
+|pypi|[ipaddress](https://github.com/phihag/ipaddress)|0.001|
+|pypi|[cryptography](https://github.com/pyca/cryptography)|0.001|
+|pypi|[pyOpenSSL](https://pyopenssl.org/)|0.001|
+|pypi|[brotlipy](https://pypi.org/project/brotlipy)|0.001|
+|pypi|[brotli](https://pypi.org/project/brotli)|0.001|
+|pypi|[brotlicffi](https://pypi.org/project/brotlicffi)|0.001|
+|pypi|[pybtex](https://pybtex.org/)|0.001|
+|pypi|[requests](https://requests.readthedocs.io)|0.001|
+
+
+> Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed.
+
+
+- Generated by [CiteLang](https://github.com/vsoch/citelang)