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Merge pull request #87 from rseng/update/analysis-2023-09-06
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Update from update/analysis-2023-09-06
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@vsoch
vsoch committed Sep 6, 2023
2 parents f967b81 + c0032c3 commit 2854619
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Showing 52 changed files with 33,145 additions and 31,538 deletions.
12 changes: 6 additions & 6 deletions _data/language_counts.json
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Original file line number Diff line number Diff line change
@@ -1,25 +1,25 @@
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126 changes: 122 additions & 4 deletions _data/repos.json
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Expand Up @@ -18360,7 +18360,56 @@
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Expand Down Expand Up @@ -23398,7 +23447,30 @@
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Expand Down Expand Up @@ -28436,7 +28508,30 @@
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Expand Down Expand Up @@ -33474,6 +33569,29 @@
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2 changes: 1 addition & 1 deletion _data/repos_counts_languages.json
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"Js": 1633,
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6 changes: 3 additions & 3 deletions _data/stats.json
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78 changes: 53 additions & 25 deletions _repos/github/ICRAR/shark/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -24,13 +24,9 @@ cmake_minimum_required(VERSION 3.2)
# We have the version here
file(STRINGS ${CMAKE_SOURCE_DIR}/VERSION SHARK_VERSION)

# We have only C++ sources, but until cmake 3.4 the check_symbol_exists
# macro didn't work properly if only defining C++ as the project language
if (${CMAKE_VERSION} VERSION_LESS 3.4)
set(SHARK_LANGS C CXX)
else()
set(SHARK_LANGS CXX)
endif()
# We have only C++ sources, but we need to allow compilation of C sources
# so that finding the HDF5 API works correctly
set(SHARK_LANGS C CXX)

# Our project...
project(SHArk VERSION ${SHARK_VERSION} LANGUAGES ${SHARK_LANGS})
Expand Down Expand Up @@ -94,23 +90,23 @@ endmacro()

#
# This is how we look for HDF5
# We are currently interested in the CXX library,
# which is a hard requirement -- if it's not there we fail misserably
# We are currently interested in the C library,
# which is a hard requirement -- if it's not there we fail miserably
#
macro(find_hdf5)

# The CONFIG mode is needed at least when using vcpkg's hdf5
if (SHARK_HDF5_USE_CONFIG)
find_package(HDF5 REQUIRED COMPONENTS CXX CONFIG)
find_package(HDF5 REQUIRED COMPONENTS C CONFIG)
else()
find_package(HDF5 REQUIRED COMPONENTS CXX)
find_package(HDF5 REQUIRED COMPONENTS C)
endif()

#
# HDF5_VERSION is defined only in cmake 3.3+
# Even in these newer cmakes, there are cases in which the version is still
# not properly calculated though, so let us check simply for an empty string
# and compile a small problem that prints the version of the HDF5 found
# and compile a small program that prints the version of the HDF5 found
# by cmake.
#
if (NOT HDF5_VERSION)
Expand All @@ -119,7 +115,7 @@ macro(find_hdf5)
set(test_file ${scratch_directory}/cmake_version.cxx)
file(WRITE ${test_file}
"#include <stdio.h>\n"
"#include <H5Cpp.h>\n"
"#include <hdf5.h>\n"
"int main(int argc, char **argv) {\n"
" printf(\"INFO:\" H5_VERSION);\n"
" return 0;\n"
Expand Down Expand Up @@ -161,9 +157,9 @@ macro(find_hdf5)
"-DHDF5_VERSION_PATCH=${HDF5_VERSION_PATCH}")

if (SHARK_HDF5_USE_CONFIG)
set(SHARK_LIBS ${SHARK_LIBS} hdf5::hdf5_cpp-shared)
set(SHARK_LIBS ${SHARK_LIBS} hdf5::hdf5-shared)
else()
set(SHARK_LIBS ${SHARK_LIBS} ${HDF5_CXX_LIBRARIES})
set(SHARK_LIBS ${SHARK_LIBS} ${HDF5_C_LIBRARIES})
endif()
endmacro()

Expand All @@ -173,6 +169,12 @@ endmacro()
# which is a hard requirement -- if it's not there we fail misserably
#
macro(find_boost)
# Boost 1.71's own CMake config file doesn't respect the
# Boost_USE_MULTITHREADED setting, which is important in environments where
# both single- and multi-threaded libraries are installed (e.g., MacOS Mojave
# with homebrew). Let's thus not use Boost's cmake config file and stick to
# cmake's own version of it for the time being
set(Boost_NO_BOOST_CMAKE ON)
find_package(Boost 1.54 COMPONENTS filesystem log program_options system REQUIRED)
set(SHARK_LIBS ${SHARK_LIBS} ${Boost_LIBRARIES})
include_directories(${Boost_INCLUDE_DIRS})
Expand Down Expand Up @@ -297,6 +299,7 @@ set(SHARKLIB_SRCS
"${data_cpp}"
"${git_revision_cpp}"
include/agn_feedback.h
include/baryon.h
include/components.h
include/cosmology.h
include/dark_matter_halos.h
Expand All @@ -306,14 +309,17 @@ set(SHARKLIB_SRCS
include/evolve_halos.h
include/exceptions.h
include/execution.h
include/galaxy.h
include/galaxy_creator.h
include/galaxy_mergers.h
include/galaxy_writer.h
include/gas_cooling.h
include/git_revision.h
include/halo.h
include/integrator.h
include/interpolator.h
include/logging.h
include/merger_tree.h
include/merger_tree_reader.h
include/mixins.h
include/naming_convention.h
Expand All @@ -326,21 +332,31 @@ set(SHARKLIB_SRCS
include/recycling.h
include/reincorporation.h
include/reionisation.h
include/sharkfwd.h
include/root_solver.h
include/shark.h
include/shark_runner.h
include/simulation.h
include/star_formation.h
include/stellar_feedback.h
include/subhalo.h
include/timer.h
include/total_baryon.h
include/tree_builder.h
include/utils.h
include/hdf5/iobase.h
include/hdf5/reader.h
include/hdf5/traits.h
include/hdf5/writer.h
include/hdf5/attribute.h
include/hdf5/data_set.h
include/hdf5/data_space.h
include/hdf5/data_type.h
include/hdf5/entity.h
include/hdf5/file.h
include/hdf5/group.h
include/hdf5/location.h
include/hdf5/utils.h
include/hdf5/io/iobase.h
include/hdf5/io/reader.h
include/hdf5/io/traits.h
include/hdf5/io/writer.h
src/agn_feedback.cpp
src/components.cpp
src/cosmology.cpp
src/execution.cpp
src/dark_matter_halos.cpp
Expand All @@ -351,6 +367,7 @@ set(SHARKLIB_SRCS
src/galaxy_mergers.cpp
src/galaxy_writer.cpp
src/gas_cooling.cpp
src/halo.cpp
src/integrator.cpp
src/interpolator.cpp
src/logging.cpp
Expand All @@ -362,16 +379,27 @@ set(SHARKLIB_SRCS
src/recycling.cpp
src/reincorporation.cpp
src/reionisation.cpp
src/root_solver.cpp
src/shark_runner.cpp
src/simulation.cpp
src/star_formation.cpp
src/stellar_feedback.cpp
src/subhalo.cpp
src/total_baryon.cpp
src/tree_builder.cpp
src/utils.cpp
src/hdf5/iobase.cpp
src/hdf5/reader.cpp
src/hdf5/traits.cpp
src/hdf5/writer.cpp
src/hdf5/attribute.cpp
src/hdf5/data_set.cpp
src/hdf5/data_space.cpp
src/hdf5/data_type.cpp
src/hdf5/entity.cpp
src/hdf5/file.cpp
src/hdf5/group.cpp
src/hdf5/location.cpp
src/hdf5/io/iobase.cpp
src/hdf5/io/reader.cpp
src/hdf5/io/traits.cpp
src/hdf5/io/writer.cpp
)

if (WIN32)
Expand Down

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