update analysis december 7th (#48)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>

_data/language_counts.json

@@ -1,25 +1,25 @@
 {
-    "unknown": 132,
-    "Python": 1707,
-    "Jupyter Notebook": 319,
+    "unknown": 134,
+    "Python": 1719,
+    "Jupyter Notebook": 323,
     "Modelica": 1,
     "Shell": 24,
     "HTML": 71,
     "Perl": 44,
-    "R": 579,
-    "C++": 468,
+    "R": 580,
+    "C++": 469,
     "Java": 93,
-    "C": 288,
+    "C": 289,
     "Rust": 19,
     "JavaScript": 74,
     "AMPL": 1,
     "MATLAB": 36,
     "Haskell": 1,
-    "Fortran": 125,
+    "Fortran": 127,
     "Clojure": 4,
     "Groovy": 5,
     "E": 1,
-    "Julia": 61,
+    "Julia": 62,
     "null": 16,
     "Matlab": 10,
     "Scala": 7,
@@ -32,14 +32,14 @@
     "Kotlin": 2,
     "Go": 22,
     "PostScript": 3,
-    "Nextflow": 7,
+    "Nextflow": 8,
     "CSS": 4,
     "NCL": 1,
     "Rich Text Format": 1,
     "Cuda": 9,
     "TeX": 19,
     "Ruby": 11,
-    "Mathematica": 15,
+    "Mathematica": 16,
     "OCaml": 2,
     "FORTRAN": 27,
     "Verilog": 1,

_data/repos.json

@@ -15975,6 +15975,92 @@
         "github/jgrembi/riskCommunicator": [],
         "github/sylvainprigent/napari-tracks-reader": [
             "napari-plugin"
+        ],
+        "gitlab/remikz/nccmp": [],
+        "gitlab/wpettersson/kep_solver": [],
+        "github/fkiwy/unTimely_Catalog_explorer": [],
+        "github/mlinderm/npsv": [],
+        "github/doriancazeneuve/ODNet": [],
+        "github/liuhao-cn/fastSHT": [
+            "gpu-computing",
+            "spherical-harmonics",
+            "cosmic-microwave-background"
+        ],
+        "github/ebmonson/2DFFTUtils-Module": [],
+        "github/sosl/H-FISTA": [],
+        "github/pydemull/activAnalyzer": [
+            "app",
+            "shiny",
+            "actigraph",
+            "monitor",
+            "accelerometer",
+            "r"
+        ],
+        "github/swagnercarena/ovejero": [],
+        "github/tbisbas/PDFchem": [],
+        "github/cosmostat/pmclib": [],
+        "github/SMTG-UCL/ShakeNBreak": [
+            "materials",
+            "materials-informatics",
+            "point-defects",
+            "science",
+            "computational-chemistry",
+            "pymatgen",
+            "python3",
+            "symmetry-breaking",
+            "structure-searching",
+            "vasp",
+            "distortions",
+            "ab-initio",
+            "dft",
+            "materials-design",
+            "semiconductors"
+        ],
+        "github/MicGrasso/bigonlight": [],
+        "github/jiwoncpark/baobab": [
+            "lenstronomy",
+            "bayesian-neural-networks",
+            "hierarchical-bayesian-analysis",
+            "strong-lensing"
+        ],
+        "github/Eventdisplay/Eventdisplay": [],
+        "github/NorwegianVeterinaryInstitute/ALPPACA": [
+            "phylogeny",
+            "clustering",
+            "nextflow",
+            "pipeline"
+        ],
+        "github/tanner-trickle/EXCEED-DM": [
+            "physics",
+            "particle-physics",
+            "materials-science",
+            "condensed-matter-physics"
+        ],
+        "github/ajwheeler/korg.jl": [],
+        "github/mtakahiro/gsf": [],
+        "github/milnus/Corekaburra": [],
+        "github/CosmoStatGW/gwfast": [
+            "automatic-differentiation",
+            "fisher-information",
+            "gravitational-waves",
+            "jax",
+            "python"
+        ],
+        "github/njcuk9999/apero-drs": [],
+        "github/ICAMS/strucscan": [],
+        "github/blackjax-devs/blackjax": [
+            "probabilistic-programming",
+            "bayesian-inference",
+            "sampling-methods",
+            "hamiltonian-monte-carlo"
+        ],
+        "github/fjankowsk/scatfit": [
+            "astronomy",
+            "astrophysics",
+            "fastradiobursts",
+            "pulsars",
+            "ionised-media",
+            "radio-astronomy"
         ]
     },
     "language": {
@@ -20329,7 +20415,33 @@
         "github/adriancorrendo/metrica": "R",
         "github/FergusDonnan/PAHDecomp": "Python",
         "github/jgrembi/riskCommunicator": "R",
-        "github/sylvainprigent/napari-tracks-reader": "Python"
+        "github/sylvainprigent/napari-tracks-reader": "Python",
+        "gitlab/remikz/nccmp": "unknown",
+        "gitlab/wpettersson/kep_solver": "unknown",
+        "github/fkiwy/unTimely_Catalog_explorer": "Python",
+        "github/mlinderm/npsv": "Python",
+        "github/doriancazeneuve/ODNet": "Jupyter Notebook",
+        "github/liuhao-cn/fastSHT": "Fortran",
+        "github/ebmonson/2DFFTUtils-Module": "Python",
+        "github/sosl/H-FISTA": "Jupyter Notebook",
+        "github/pydemull/activAnalyzer": "R",
+        "github/swagnercarena/ovejero": "Python",
+        "github/tbisbas/PDFchem": "Jupyter Notebook",
+        "github/cosmostat/pmclib": "C",
+        "github/SMTG-UCL/ShakeNBreak": "Python",
+        "github/MicGrasso/bigonlight": "Mathematica",
+        "github/jiwoncpark/baobab": "Python",
+        "github/Eventdisplay/Eventdisplay": "C++",
+        "github/NorwegianVeterinaryInstitute/ALPPACA": "Nextflow",
+        "github/tanner-trickle/EXCEED-DM": "Fortran",
+        "github/ajwheeler/korg.jl": "Julia",
+        "github/mtakahiro/gsf": "Jupyter Notebook",
+        "github/milnus/Corekaburra": "Python",
+        "github/CosmoStatGW/gwfast": "Python",
+        "github/njcuk9999/apero-drs": "Python",
+        "github/ICAMS/strucscan": "Python",
+        "github/blackjax-devs/blackjax": "Python",
+        "github/fjankowsk/scatfit": "Python"
     },
     "url": {
         "gitlab/chiemotono/mdcontactcom": "https://gitlab.com/chiemotono/mdcontactcom",
@@ -24683,7 +24795,33 @@
         "github/adriancorrendo/metrica": "https://github.com/adriancorrendo/metrica",
         "github/FergusDonnan/PAHDecomp": "https://github.com/FergusDonnan/PAHDecomp",
         "github/jgrembi/riskCommunicator": "https://github.com/jgrembi/riskCommunicator",
-        "github/sylvainprigent/napari-tracks-reader": "https://github.com/sylvainprigent/napari-tracks-reader"
+        "github/sylvainprigent/napari-tracks-reader": "https://github.com/sylvainprigent/napari-tracks-reader",
+        "gitlab/remikz/nccmp": "https://gitlab.com/remikz/nccmp",
+        "gitlab/wpettersson/kep_solver": "https://gitlab.com/wpettersson/kep_solver",
+        "github/fkiwy/unTimely_Catalog_explorer": "https://github.com/fkiwy/unTimely_Catalog_explorer",
+        "github/mlinderm/npsv": "https://github.com/mlinderm/npsv",
+        "github/doriancazeneuve/ODNet": "https://github.com/doriancazeneuve/ODNet",
+        "github/liuhao-cn/fastSHT": "https://github.com/liuhao-cn/fastSHT",
+        "github/ebmonson/2DFFTUtils-Module": "https://github.com/ebmonson/2DFFTUtils-Module",
+        "github/sosl/H-FISTA": "https://github.com/sosl/H-FISTA",
+        "github/pydemull/activAnalyzer": "https://github.com/pydemull/activAnalyzer",
+        "github/swagnercarena/ovejero": "https://github.com/swagnercarena/ovejero",
+        "github/tbisbas/PDFchem": "https://github.com/tbisbas/PDFchem",
+        "github/cosmostat/pmclib": "https://github.com/CosmoStat/pmclib",
+        "github/SMTG-UCL/ShakeNBreak": "https://github.com/SMTG-UCL/ShakeNBreak",
+        "github/MicGrasso/bigonlight": "https://github.com/MicGrasso/bigonlight",
+        "github/jiwoncpark/baobab": "https://github.com/jiwoncpark/baobab",
+        "github/Eventdisplay/Eventdisplay": "https://github.com/Eventdisplay/Eventdisplay",
+        "github/NorwegianVeterinaryInstitute/ALPPACA": "https://github.com/NorwegianVeterinaryInstitute/ALPPACA",
+        "github/tanner-trickle/EXCEED-DM": "https://github.com/tanner-trickle/EXCEED-DM",
+        "github/ajwheeler/korg.jl": "https://github.com/ajwheeler/Korg.jl",
+        "github/mtakahiro/gsf": "https://github.com/mtakahiro/gsf",
+        "github/milnus/Corekaburra": "https://github.com/milnus/Corekaburra",
+        "github/CosmoStatGW/gwfast": "https://github.com/CosmoStatGW/gwfast",
+        "github/njcuk9999/apero-drs": "https://github.com/njcuk9999/apero-drs",
+        "github/ICAMS/strucscan": "https://github.com/ICAMS/strucscan",
+        "github/blackjax-devs/blackjax": "https://github.com/blackjax-devs/blackjax",
+        "github/fjankowsk/scatfit": "https://github.com/fjankowsk/scatfit"
     },
     "description": {
         "gitlab/chiemotono/mdcontactcom": "",
@@ -29037,6 +29175,32 @@
         "github/adriancorrendo/metrica": "Prediction Performance Metrics",
         "github/FergusDonnan/PAHDecomp": null,
         "github/jgrembi/riskCommunicator": "An R package for estimating risk differences and relative risk measures",
-        "github/sylvainprigent/napari-tracks-reader": "napari reader plugin for tracking"
+        "github/sylvainprigent/napari-tracks-reader": "napari reader plugin for tracking",
+        "gitlab/remikz/nccmp": "nccmp - Compare 2 NetCDF files. ",
+        "gitlab/wpettersson/kep_solver": "A Python package for reading and solving single instances of kidney exchange problems. ",
+        "github/fkiwy/unTimely_Catalog_explorer": "A search and visualization tool for the unTimely Catalog",
+        "github/mlinderm/npsv": "Non-parametric structural variant genotyper",
+        "github/doriancazeneuve/ODNet": "ODNet : Asteroid Occultation Detection Convolutional Neural Network",
+        "github/liuhao-cn/fastSHT": "Fast Spherical Harmonic Transforms for a large number of sky maps",
+        "github/ebmonson/2DFFTUtils-Module": "A Python module implementation of some tasks associated with measuring spiral galaxy pitch angle with 2DFFT. To be merged into the 2dfft_utils repository at a later date. TODO: Rename package and repository to SpiralUtils.",
+        "github/sosl/H-FISTA": "Hierarchical FISTA - phase retrieval for pulsar spectroscopy",
+        "github/pydemull/activAnalyzer": null,
+        "github/swagnercarena/ovejero": "Conducts hierarchical inference of strongly-lensed systems with Bayesian neural networks",
+        "github/tbisbas/PDFchem": "Estimate the average abundance of species from Av-PDFs",
+        "github/cosmostat/pmclib": "Population Monte Carlo (PMC) library",
+        "github/SMTG-UCL/ShakeNBreak": "Defect structure-searching method employing chemically-guided bond distortions to locate ground-state and metastable structures of point defects in solid materials.",
+        "github/MicGrasso/bigonlight": "The BiGONLight is a Mathematica package created by Michele Grasso to study light propagation in the geometric optics regime using the Bi-local Geodesic Operator formalism.",
+        "github/jiwoncpark/baobab": "Generates the training data for hierarchical inference of strongly-lensed systems with Bayesian neural networks",
+        "github/Eventdisplay/Eventdisplay": "A reconstruction and analysis pipeline for ground-based imaging atmospheric Cherenkov Telescopes",
+        "github/NorwegianVeterinaryInstitute/ALPPACA": "A tooL for Prokaryotic Phylogeny And Clustering Analysis",
+        "github/tanner-trickle/EXCEED-DM": "EXCEED-DM: EXtended Calculation of Electronic Excitations for Direct detection of Dark Matter",
+        "github/ajwheeler/korg.jl": "1D LTE stellar spectral synthesis in pure Julia",
+        "github/mtakahiro/gsf": "Grism SED Fitting package",
+        "github/milnus/Corekaburra": "Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes ",
+        "github/CosmoStatGW/gwfast": "A Fisher information matrix python package for GW detector networks.",
+        "github/njcuk9999/apero-drs": "A PipelinE to Reduce Observations - The DRS for SPIRou (CFHT)",
+        "github/ICAMS/strucscan": "A lightweight python-based framework for high-throughput material simulation",
+        "github/blackjax-devs/blackjax": "BlackJAX is a sampling library designed for ease of use, speed and modularity.",
+        "github/fjankowsk/scatfit": "Scattering fits of Fast Radio Burst and pulsar data."
     }
 }

_data/repos_counts_languages.json

@@ -1,7 +1,7 @@
 {
-    "Python": 4806,
-    "R": 2092,
-    "Cpp": 388,
+    "Python": 4830,
+    "R": 2098,
+    "Cpp": 394,
     "Js": 1462,
     "Go": 245
 }

_data/stats.json

@@ -1,9 +1,9 @@
 {
-    "python_deps": 3942,
-    "cpp_deps": 388,
-    "r_deps": 2092,
+    "python_deps": 3957,
+    "cpp_deps": 394,
+    "r_deps": 2098,
     "js_deps": 1462,
     "go_deps": 245,
-    "total_repos": 4352,
-    "total_parsed": 2281
+    "total_repos": 4378,
+    "total_parsed": 2295
 }

_repos/github/COMBINE-lab/cuttlefish/CMakeLists.txt

@@ -8,7 +8,7 @@ cmake_minimum_required(VERSION 3.14)
 # Name the project, its version, and languages used in it.
 set(PROJECT_NAME cuttlefish)
 project(${PROJECT_NAME}
-        VERSION 2.0.0
+        VERSION 2.1.1
         LANGUAGES CXX C
         )
 

_repos/github/CosmoStatGW/gwfast/README.md

@@ -0,0 +1,84 @@
+---
+title: github/CosmoStatGW/gwfast
+layout: repo
+tipue_search_active: true
+exclude_from_search: true
+---
+# Software Credit
+
+|Manager|Name|Credit|
+|-------|----|------|
+|pypi|[matplotlib](https://matplotlib.org)|0.118|
+|pypi|[h5py](http://www.h5py.org)|0.11|
+|pypi|[numdifftools](https://github.com/pbrod/numdifftools)|0.11|
+|pypi|[schwimmbad](https://github.com/adrn/schwimmbad)|0.11|
+|pypi|[cycler](https://github.com/matplotlib/cycler)|0.11|
+|pypi|[typing-extensions](https://typing.readthedocs.io/)|0.109|
+|pypi|[pytest](https://docs.pytest.org/en/latest/)|0.041|
+|pypi|[coverage](https://pypi.org/project/coverage)|0.024|
+|pypi|[pycodestyle](https://pycodestyle.pycqa.org/)|0.022|
+|pypi|[pytest-cov](https://github.com/pytest-dev/pytest-cov)|0.019|
+|pypi|[cffi](https://pypi.org/project/cffi)|0.012|
+|pypi|[requests](https://pypi.org/project/requests)|0.012|
+|setup.py|github/CosmoStatGW/gwfast|0.01|
+|pypi|[munkres](https://software.clapper.org/munkres/)|0.008|
+|pypi|[brotli](https://github.com/google/brotli)|0.008|
+|pypi|[scipy](https://www.scipy.org)|0.008|
+|pypi|[sympy](https://sympy.org)|0.008|
+|pypi|[sphinx](https://pypi.org/project/sphinx)|0.008|
+|pypi|[packaging](https://pypi.org/project/packaging)|0.008|
+|pypi|[pytest-xdist](https://pypi.org/project/pytest-xdist)|0.007|
+|pypi|[pyroma](https://pypi.org/project/pyroma)|0.007|
+|pypi|[markdown2](https://pypi.org/project/markdown2)|0.007|
+|pypi|[defusedxml](https://pypi.org/project/defusedxml)|0.007|
+|pypi|[check-manifest](https://pypi.org/project/check-manifest)|0.007|
+|pypi|[sphinxext-opengraph](https://pypi.org/project/sphinxext-opengraph)|0.007|
+|pypi|[sphinx-rtd-theme](https://pypi.org/project/sphinx-rtd-theme)|0.007|
+|pypi|[sphinx-removed-in](https://pypi.org/project/sphinx-removed-in)|0.007|
+|pypi|[sphinx-issues](https://pypi.org/project/sphinx-issues)|0.007|
+|pypi|[sphinx-copybutton](https://pypi.org/project/sphinx-copybutton)|0.007|
+|pypi|[olefile](https://pypi.org/project/olefile)|0.007|
+|pypi|[enum34](https://pypi.org/project/enum34)|0.005|
+|pypi|[pytest-randomly](https://pypi.org/project/pytest-randomly)|0.004|
+|pypi|[six](https://pypi.org/project/six)|0.004|
+|pypi|[virtualenv](https://pypi.org/project/virtualenv)|0.003|
+|pypi|[process-tests](https://pypi.org/project/process-tests)|0.003|
+|pypi|[hunter](https://pypi.org/project/hunter)|0.003|
+|pypi|[fields](https://pypi.org/project/fields)|0.003|
+|pypi|[Cython](https://pypi.org/project/Cython)|0.002|
+|pypi|[BeautifulSoup4](https://pypi.org/project/BeautifulSoup4)|0.002|
+|pypi|[html5lib](https://pypi.org/project/html5lib)|0.002|
+|pypi|[cssselect](https://pypi.org/project/cssselect)|0.002|
+|pypi|[psutil](https://pypi.org/project/psutil)|0.001|
+|pypi|[flake8](https://pypi.org/project/flake8)|0.001|
+|pypi|[sphinx-bootstrap-theme](https://pypi.org/project/sphinx-bootstrap-theme)|0.001|
+|pypi|[xmlschema](https://pypi.org/project/xmlschema)|0.001|
+|pypi|[pygments](https://pypi.org/project/pygments)|0.001|
+|pypi|[nose](https://pypi.org/project/nose)|0.001|
+|pypi|[mock](https://pypi.org/project/mock)|0.001|
+|pypi|[hypothesis](https://pypi.org/project/hypothesis)|0.001|
+|pypi|[argcomplete](https://pypi.org/project/argcomplete)|0.001|
+|pypi|[colorama](https://pypi.org/project/colorama)|0.001|
+|pypi|[atomicwrites](https://pypi.org/project/atomicwrites)|0.001|
+|pypi|[importlib-metadata](https://pypi.org/project/importlib-metadata)|0.001|
+|pypi|[tomli](https://pypi.org/project/tomli)|0.001|
+|pypi|[py](https://pypi.org/project/py)|0.001|
+|pypi|[pluggy](https://pypi.org/project/pluggy)|0.001|
+|pypi|[iniconfig](https://pypi.org/project/iniconfig)|0.001|
+|pypi|[attrs](https://pypi.org/project/attrs)|0.001|
+|pypi|[mpmath](http://mpmath.org/)|0.001|
+|pypi|[fonttools](http://github.com/fonttools/fonttools)|0.001|
+|pypi|[kiwisolver](https://github.com/nucleic/kiwi)|0.001|
+|pypi|[pillow](https://python-pillow.org)|0.001|
+|pypi|[scandir](https://pypi.org/project/scandir)|0.001|
+|pypi|[typing](https://pypi.org/project/typing)|0.001|
+|pypi|[backports.os](https://pypi.org/project/backports.os)|0.001|
+|pypi|[setuptools](https://pypi.org/project/setuptools)|0.001|
+|pypi|[pytz](https://pypi.org/project/pytz)|0.001|
+|pypi|[appdirs](https://pypi.org/project/appdirs)|0.001|
+
+
+> Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed.
+
+
+- Generated by [CiteLang](https://github.com/vsoch/citelang)