updates - manually done because too big for actions with all the rece…

…nt changes! (#31) Signed-off-by: vsoch <vsoch@users.noreply.github.com>
rseng · Aug 11, 2022 · 9e0d2f2 · 9e0d2f2
1 parent 8403f04
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Showing 866 changed files with 99,529 additions and 25,524 deletions.
diff --git a/_data/language_counts.json b/_data/language_counts.json
@@ -1,25 +1,25 @@
 {
     "unknown": 117,
-    "Python": 1571,
-    "Jupyter Notebook": 295,
+    "Python": 1585,
+    "Jupyter Notebook": 296,
     "Modelica": 1,
     "Shell": 24,
     "HTML": 60,
     "Perl": 41,
-    "R": 543,
-    "C++": 443,
+    "R": 544,
+    "C++": 446,
     "Java": 88,
-    "C": 283,
+    "C": 284,
     "Rust": 11,
     "JavaScript": 73,
     "AMPL": 1,
     "MATLAB": 35,
     "Haskell": 1,
-    "Fortran": 120,
+    "Fortran": 121,
     "Clojure": 4,
     "Groovy": 5,
     "E": 1,
-    "Julia": 48,
+    "Julia": 49,
     "null": 16,
     "Matlab": 10,
     "Scala": 6,
@@ -47,13 +47,13 @@
     "Standard ML": 1,
     "Common Workflow Language": 2,
     "Dockerfile": 3,
-    "Roff": 5,
+    "Roff": 6,
     "PLpgSQL": 1,
     "Vue": 2,
     "CMake": 2,
     "Stan": 2,
     "Lua": 3,
-    "PHP": 2,
+    "PHP": 3,
     "Gnuplot": 3,
     "HCL": 1,
     "IDL": 29,

diff --git a/_data/repos.json b/_data/repos.json
@@ -15007,6 +15007,73 @@
             "light-curves",
             "exoplanets",
             "planets"
+        ],
+        "github/pavanvyn/triple-stability": [],
+        "github/bic-nirrh/precocity": [],
+        "github/ncbi/datasets": [],
+        "github/statgen/popscle": [
+            "rna-seq",
+            "demultiplex",
+            "single-cell-sequencing",
+            "single-cell-rna-seq",
+            "single-cell-omics"
+        ],
+        "github/Cadaei-Yuvxvs/OSHy-X": [],
+        "github/RafaelSdeSouza/qrpca": [
+            "pca",
+            "r",
+            "dimensionality-reduction"
+        ],
+        "github/psheehan/pdspy": [],
+        "github/simoncasassus/ConeRot": [],
+        "github/marcelauliano/MitoHiFi": [],
+        "github/max-little/GRAPL": [],
+        "github/chhylp123/hifiasm": [
+            "bioinformatics",
+            "denovo-assembly",
+            "genomics",
+            "hifi-read",
+            "pacbio"
+        ],
+        "github/cpinte/mcfost": [
+            "astronomy",
+            "astrophysics",
+            "astrophysical-simulation",
+            "radiative-transfer",
+            "fortran"
+        ],
+        "github/cpinte/pymcfost": [],
+        "github/cpinte/casa_cube": [],
+        "github/sparks-baird/xtal2png": [
+            "crystallography",
+            "image-processing",
+            "machine-learning",
+            "materials-informatics",
+            "python",
+            "materials-science"
+        ],
+        "github/aabdurrouf/piXedfit": [
+            "astrophysics",
+            "galaxies",
+            "astronomical-images",
+            "astronomical-spectroscopy",
+            "pixel-binning",
+            "sed-fitting"
+        ],
+        "github/seheonoh/baygaud": [],
+        "github/dgerosa/gwdet": [],
+        "github/LCOGT/banzai": [
+            "backend"
+        ],
+        "github/astro-informatics/massmappy": [],
+        "github/astro-informatics/ssht": [],
+        "github/huchiayu/ParticleGridMapper.jl": [],
+        "github/krab1k/ChargeFW2": [
+            "charges"
+        ],
+        "github/barricklab/pLannotate": [
+            "plasmid-annotation",
+            "webserver"
         ]
     },
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@@ -19054,7 +19121,31 @@
         "github/danhey/echelle": "Jupyter Notebook",
         "github/oscaribv/pyaneti": "Jupyter Notebook",
         "github/oscaribv/exotrending": "Fortran",
-        "github/oscaribv/citlalicue": "Jupyter Notebook"
+        "github/oscaribv/citlalicue": "Jupyter Notebook",
+        "github/pavanvyn/triple-stability": "Python",
+        "github/bic-nirrh/precocity": "PHP",
+        "github/ncbi/datasets": "Jupyter Notebook",
+        "github/statgen/popscle": "C++",
+        "github/Cadaei-Yuvxvs/OSHy-X": "Python",
+        "github/RafaelSdeSouza/qrpca": "R",
+        "github/psheehan/pdspy": "Python",
+        "github/simoncasassus/ConeRot": "Python",
+        "github/marcelauliano/MitoHiFi": "Python",
+        "github/max-little/GRAPL": "Python",
+        "github/chhylp123/hifiasm": "C++",
+        "github/cpinte/mcfost": "Fortran",
+        "github/cpinte/pymcfost": "Python",
+        "github/cpinte/casa_cube": "Python",
+        "github/sparks-baird/xtal2png": "Python",
+        "github/aabdurrouf/piXedfit": "Python",
+        "github/seheonoh/baygaud": "Roff",
+        "github/dgerosa/gwdet": "Python",
+        "github/LCOGT/banzai": "Python",
+        "github/astro-informatics/massmappy": "Python",
+        "github/astro-informatics/ssht": "C",
+        "github/huchiayu/ParticleGridMapper.jl": "Julia",
+        "github/krab1k/ChargeFW2": "C++",
+        "github/barricklab/pLannotate": "Python"
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@@ -23101,7 +23192,31 @@
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         "github/oscaribv/exotrending": "https://github.com/oscaribv/exotrending",
-        "github/oscaribv/citlalicue": "https://github.com/oscaribv/citlalicue"
+        "github/oscaribv/citlalicue": "https://github.com/oscaribv/citlalicue",
+        "github/pavanvyn/triple-stability": "https://github.com/pavanvyn/triple-stability",
+        "github/bic-nirrh/precocity": "https://github.com/bic-nirrh/precocity",
+        "github/ncbi/datasets": "https://github.com/ncbi/datasets",
+        "github/statgen/popscle": "https://github.com/statgen/popscle",
+        "github/Cadaei-Yuvxvs/OSHy-X": "https://github.com/Cadaei-Yuvxvs/OSHy-X",
+        "github/RafaelSdeSouza/qrpca": "https://github.com/RafaelSdeSouza/qrpca",
+        "github/psheehan/pdspy": "https://github.com/psheehan/pdspy",
+        "github/simoncasassus/ConeRot": "https://github.com/simoncasassus/ConeRot",
+        "github/marcelauliano/MitoHiFi": "https://github.com/marcelauliano/MitoHiFi",
+        "github/max-little/GRAPL": "https://github.com/max-little/GRAPL",
+        "github/chhylp123/hifiasm": "https://github.com/chhylp123/hifiasm",
+        "github/cpinte/mcfost": "https://github.com/cpinte/mcfost",
+        "github/cpinte/pymcfost": "https://github.com/cpinte/pymcfost",
+        "github/cpinte/casa_cube": "https://github.com/cpinte/casa_cube",
+        "github/sparks-baird/xtal2png": "https://github.com/sparks-baird/xtal2png",
+        "github/aabdurrouf/piXedfit": "https://github.com/aabdurrouf/piXedfit",
+        "github/seheonoh/baygaud": "https://github.com/seheonoh/baygaud",
+        "github/dgerosa/gwdet": "https://github.com/dgerosa/gwdet",
+        "github/LCOGT/banzai": "https://github.com/LCOGT/banzai",
+        "github/astro-informatics/massmappy": "https://github.com/astro-informatics/massmappy",
+        "github/astro-informatics/ssht": "https://github.com/astro-informatics/ssht",
+        "github/huchiayu/ParticleGridMapper.jl": "https://github.com/huchiayu/ParticleGridMapper.jl",
+        "github/krab1k/ChargeFW2": "https://github.com/krab1k/ChargeFW2",
+        "github/barricklab/pLannotate": "https://github.com/barricklab/pLannotate"
     },
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         "gitlab/chiemotono/mdcontactcom": "",
@@ -27148,6 +27263,30 @@
         "github/danhey/echelle": "Dynamic echelle diagrams for asteroseismology",
         "github/oscaribv/pyaneti": "A multi-planet Radial Velocity and Transit modelling software",
         "github/oscaribv/exotrending": "A fast and easy-to-use light curve detrending software for exoplanets",
-        "github/oscaribv/citlalicue": "Create and manipulate stellar light curves!"
+        "github/oscaribv/citlalicue": "Create and manipulate stellar light curves!",
+        "github/pavanvyn/triple-stability": "Code to check if a given configuration of a triple-star system is dynamically stable",
+        "github/bic-nirrh/precocity": "Database and enrichment analysis of genes associated with precocious puberty",
+        "github/ncbi/datasets": "NCBI Datasets is an experimental resource for finding and building datasets",
+        "github/statgen/popscle": "A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools",
+        "github/Cadaei-Yuvxvs/OSHy-X": "Open Source Hypothalamic Atlas and Segmentation for 3T and 7T",
+        "github/RafaelSdeSouza/qrpca": "QR based Principal Components Analysis",
+        "github/psheehan/pdspy": "pdspy: MCMC for Monte Carlo Dust Radiative Transfer Modeling",
+        "github/simoncasassus/ConeRot": null,
+        "github/marcelauliano/MitoHiFi": "Find, circularise and annotate mitogenome from PacBio assemblies",
+        "github/max-little/GRAPL": "GRAPL: A computational library for nonparametric structural causal modelling, analysis and inference",
+        "github/chhylp123/hifiasm": "Hifiasm: a haplotype-resolved assembler for accurate Hifi reads ",
+        "github/cpinte/mcfost": "MCFOST radiative transfer code",
+        "github/cpinte/pymcfost": "python interface to the 3D radiative transfer code mcfost",
+        "github/cpinte/casa_cube": "python tool to display and analysis astronomical data cubes",
+        "github/sparks-baird/xtal2png": "Encode/decode a crystal structure to/from a grayscale PNG image for direct use with image-based machine learning models such as Palette.",
+        "github/aabdurrouf/piXedfit": "piXedfit is a Python package designed for analyzing spatially resolved SEDs of galaxies  ",
+        "github/seheonoh/baygaud": null,
+        "github/dgerosa/gwdet": "Detectability of gravitational-wave signals from compact binary coalescences",
+        "github/LCOGT/banzai": "Beautiful Algorithms to Normalize Zillions of Astronomical Images",
+        "github/astro-informatics/massmappy": "Mapping dark matter on the celestial sphere",
+        "github/astro-informatics/ssht": "Fast and exact spin spherical harmonic transforms",
+        "github/huchiayu/ParticleGridMapper.jl": null,
+        "github/krab1k/ChargeFW2": "The core part of Atomic Charge Calculator II.",
+        "github/barricklab/pLannotate": "Webserver and command line tool for annotating engineered plasmids"
     }
 }
diff --git a/_data/repos_counts_languages.json b/_data/repos_counts_languages.json
@@ -1,7 +1,7 @@
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-    "Python": 3919,
-    "R": 2001,
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+    "R": 2003,
     "Cpp": 369,
-    "Js": 1284,
+    "Js": 1314,
     "Go": 234
 }
diff --git a/_data/stats.json b/_data/stats.json
@@ -1,9 +1,9 @@
 {
-    "python_deps": 3303,
+    "python_deps": 3713,
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-    "r_deps": 2001,
-    "js_deps": 1284,
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-    "total_repos": 4044,
-    "total_parsed": 1900
+    "total_repos": 4068,
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 }
diff --git a/_repos/github/1313e/PRISM/README.md b/_repos/github/1313e/PRISM/README.md
@@ -0,0 +1,75 @@
+---
+title: github/1313e/PRISM
+layout: repo
+tipue_search_active: true
+exclude_from_search: true
+---
+# Software Credit
+
+|Manager|Name|Credit|
+|-------|----|------|
+|pypi|[numpy](https://pypi.org/project/numpy)|0.15|
+|pypi|[matplotlib](https://matplotlib.org)|0.11|
+|pypi|[colorspacious](https://github.com/njsmith/colorspacious)|0.069|
+|pypi|[qtpy](https://github.com/spyder-ide/qtpy)|0.059|
+|pypi|[sortedcontainers](http://www.grantjenks.com/docs/sortedcontainers/)|0.059|
+|pypi|[cycler](https://github.com/matplotlib/cycler)|0.055|
+|pypi|[PyQt5_sip](https://www.riverbankcomputing.com/software/sip/)|0.055|
+|pypi|[objgraph](https://pypi.org/project/objgraph)|0.054|
+|pypi|[typing-extensions](https://pypi.org/project/typing-extensions)|0.054|
+|pypi|[e13tools](https://e13tools.readthedocs.io)|0.045|
+|pypi|[PyQt5-Qt5](https://pypi.org/project/PyQt5-Qt5)|0.027|
+|pypi|[PyQt5-sip](https://pypi.org/project/PyQt5-sip)|0.027|
+|pypi|[h5py](http://www.h5py.org)|0.022|
+|pypi|[dill](https://github.com/uqfoundation/dill)|0.019|
+|pypi|[scipy](https://pypi.org/project/scipy)|0.014|
+|setup.py|github/1313e/PRISM|0.01|
+|pypi|[scikit-learn](https://pypi.org/project/scikit-learn)|0.01|
+|pypi|[pytest](https://pypi.org/project/pytest)|0.009|
+|pypi|[mkdocs](https://pypi.org/project/mkdocs)|0.006|
+|pypi|[setuptools](https://pypi.org/project/setuptools)|0.006|
+|pypi|[joblib](https://pypi.org/project/joblib)|0.006|
+|pypi|[pandas](https://pypi.org/project/pandas)|0.006|
+|pypi|[xattr](https://pypi.org/project/xattr)|0.004|
+|pypi|[unicodedata2](https://pypi.org/project/unicodedata2)|0.004|
+|pypi|[munkres](https://pypi.org/project/munkres)|0.004|
+|pypi|[brotli](https://pypi.org/project/brotli)|0.004|
+|pypi|[brotlicffi](https://pypi.org/project/brotlicffi)|0.004|
+|pypi|[skia-pathops](https://pypi.org/project/skia-pathops)|0.004|
+|pypi|[sympy](https://pypi.org/project/sympy)|0.004|
+|pypi|[lz4](https://pypi.org/project/lz4)|0.004|
+|pypi|[zopfli](https://pypi.org/project/zopfli)|0.004|
+|pypi|[lxml](https://pypi.org/project/lxml)|0.004|
+|pypi|[fs](https://pypi.org/project/fs)|0.004|
+|pypi|[pyqt5](https://www.riverbankcomputing.com/software/pyqt/)|0.004|
+|pypi|[cmasher](https://cmasher.readthedocs.io)|0.004|
+|pypi|[hickle](http://github.com/telegraphic/hickle)|0.004|
+|pypi|[mlxtend](https://github.com/rasbt/mlxtend)|0.004|
+|pypi|[mpi4pyd](https://github.com/1313e/mpi4pyd)|0.004|
+|pypi|[tqdm](https://tqdm.github.io)|0.004|
+|pypi|[threadpoolctl](https://pypi.org/project/threadpoolctl)|0.004|
+|pypi|[pytest-timeout](https://pypi.org/project/pytest-timeout)|0.003|
+|pypi|[pytest-cov](https://pypi.org/project/pytest-cov)|0.003|
+|pypi|[pyroma](https://pypi.org/project/pyroma)|0.003|
+|pypi|[packaging](https://pypi.org/project/packaging)|0.003|
+|pypi|[markdown2](https://pypi.org/project/markdown2)|0.003|
+|pypi|[defusedxml](https://pypi.org/project/defusedxml)|0.003|
+|pypi|[coverage](https://pypi.org/project/coverage)|0.003|
+|pypi|[check-manifest](https://pypi.org/project/check-manifest)|0.003|
+|pypi|[sphinxext-opengraph](https://pypi.org/project/sphinxext-opengraph)|0.003|
+|pypi|[sphinx-rtd-theme](https://pypi.org/project/sphinx-rtd-theme)|0.003|
+|pypi|[sphinx-removed-in](https://pypi.org/project/sphinx-removed-in)|0.003|
+|pypi|[sphinx-issues](https://pypi.org/project/sphinx-issues)|0.003|
+|pypi|[sphinx-copybutton](https://pypi.org/project/sphinx-copybutton)|0.003|
+|pypi|[sphinx](https://pypi.org/project/sphinx)|0.003|
+|pypi|[olefile](https://pypi.org/project/olefile)|0.003|
+|pypi|[prism](https://prism-tool.readthedocs.io/en/latest)|0.001|
+|pypi|[fonttools](http://github.com/fonttools/fonttools)|0.001|
+|pypi|[kiwisolver](https://github.com/nucleic/kiwi)|0.001|
+|pypi|[pillow](https://python-pillow.org)|0.001|
+
+
+> Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed.
+
+
+- Generated by [CiteLang](https://github.com/vsoch/citelang)
diff --git a/_repos/github/1313e/PRISM/badge.png b/_repos/github/1313e/PRISM/badge.png