-
-
Notifications
You must be signed in to change notification settings - Fork 3
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #74 from rseng/update/analysis-2023-06-07
Update from update/analysis-2023-06-07
- Loading branch information
Showing
70 changed files
with
34,587 additions
and
30,305 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,6 @@ | ||
| { | ||
| "Python": 5255, | ||
| "R": 2151, | ||
| "Python": 5281, | ||
| "R": 2158, | ||
| "Cpp": 436, | ||
| "Js": 1477, | ||
| "Go": 245 | ||
|
|
||
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,9 @@ | ||
| { | ||
| "python_deps": 4307, | ||
| "python_deps": 4331, | ||
| "cpp_deps": 436, | ||
| "r_deps": 2151, | ||
| "r_deps": 2158, | ||
| "js_deps": 1477, | ||
| "go_deps": 245, | ||
| "total_repos": 4783, | ||
| "total_parsed": 2478 | ||
| "total_repos": 4812, | ||
| "total_parsed": 2488 | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| Package: proteoDA | ||
| Title: Streamlined Differential Abundance Analysis of Proteomic Data | ||
| Version: 0.0.0.9002 | ||
| Authors@R: | ||
| c( | ||
| person(given = "Timothy", family = "Thurman", email = "tthurman@uams.edu", role = c("aut", "cre")), | ||
| person(given = "Charity", family = "Washam", email = "cwasham@uams.edu", role = c("aut")), | ||
| person(given = "Jordan", family = "Bird", email = "jtbird@uams.edu", role = c("ctb")), | ||
| person(given = "Stephanie", family = "Byrum", email = "sbyrum@uams.edu", role = c("aut")) | ||
| ) | ||
| Description: Functions for performing differential abundance analysis of proteomic data. | ||
| License: GPL (>= 3) | ||
| biocViews: | ||
| Imports: | ||
| circlize, | ||
| cli (>= 3.6.0), | ||
| ComplexHeatmap, | ||
| ggplot2 (>= 3.4.0), | ||
| ggrepel, | ||
| ggtree (>= 3.4.0), | ||
| grid, | ||
| gridExtra, | ||
| htmlwidgets, | ||
| knitr, | ||
| limma, | ||
| MASS, | ||
| openxlsx, | ||
| patchwork, | ||
| preprocessCore, | ||
| rlang (>= 1.0.0), | ||
| rmarkdown, | ||
| statmod (>= 1.2.2), | ||
| stringr, | ||
| vsn | ||
| Depends: | ||
| R (>= 4.1.0) | ||
| Suggests: | ||
| grDevices, | ||
| ggrastr, | ||
| testthat (>= 3.0.0) | ||
| Config/testthat/edition: 3 | ||
| Encoding: UTF-8 | ||
| Roxygen: list(markdown = TRUE) | ||
| RoxygenNote: 7.2.2 | ||
| VignetteBuilder: knitr |
Oops, something went wrong.