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Automated deployment to update software database 2022-10-12 (#40)
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| @@ -1,5 +1,5 @@ | ||
| { | ||
| "Python": 4616, | ||
| "Python": 4620, | ||
| "R": 2063, | ||
| "Cpp": 371, | ||
| "Js": 1387, | ||
|
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| @@ -1,9 +1,9 @@ | ||
| { | ||
| "python_deps": 3780, | ||
| "python_deps": 3783, | ||
| "cpp_deps": 371, | ||
| "r_deps": 2063, | ||
| "js_deps": 1387, | ||
| "go_deps": 245, | ||
| "total_repos": 4210, | ||
| "total_parsed": 2179 | ||
| "total_repos": 4217, | ||
| "total_parsed": 2182 | ||
| } |
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| @@ -0,0 +1,20 @@ | ||
| CMAKE_MINIMUM_REQUIRED(VERSION 2.8.5) | ||
|
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| #=============================================================================== | ||
| # Load macros and functions for Elements-based projects | ||
| #=============================================================================== | ||
|
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| find_package(ElementsProject) | ||
|
|
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| set(USE_SPHINX OFF | ||
| CACHE STRING "Sphinx API documentation" | ||
| FORCE) | ||
|
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| #=============================================================================== | ||
| # Declare project name and version | ||
| # Example with dependency: | ||
| # elements_project(MyProject 1.0 USE Element 3.9) | ||
| #=============================================================================== | ||
|
|
||
| elements_project(EleFits 5.1 USE Elements 6.0.1 | ||
| DESCRIPTION "A modern C++ API on top of CFITSIO") |
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| --- | ||
| title: github/enthought/vpsearch | ||
| layout: repo | ||
| tipue_search_active: true | ||
| exclude_from_search: true | ||
| --- | ||
| # Software Credit | ||
|
|
||
| |Manager|Name|Credit| | ||
| |-------|----|------| | ||
| |pypi|[numpy](https://www.numpy.org)|0.33| | ||
| |pypi|[parasail](https://github.com/jeffdaily/parasail-python)|0.33| | ||
| |pypi|[colorama](https://github.com/tartley/colorama)|0.163| | ||
| |setup.py|github/enthought/vpsearch|0.01| | ||
| |pypi|[importlib-resources](https://github.com/python/importlib_resources)|0.009| | ||
| |pypi|[pytest-mypy](https://pypi.org/project/pytest-mypy)|0.009| | ||
| |pypi|[pytest-black](https://pypi.org/project/pytest-black)|0.009| | ||
| |pypi|[pytest-perf](https://pypi.org/project/pytest-perf)|0.009| | ||
| |pypi|[flufl.flake8](https://pypi.org/project/flufl.flake8)|0.009| | ||
| |pypi|[pyfakefs](https://pypi.org/project/pyfakefs)|0.009| | ||
| |pypi|[packaging](https://pypi.org/project/packaging)|0.009| | ||
| |pypi|[pytest-enabler](https://pypi.org/project/pytest-enabler)|0.009| | ||
| |pypi|[pytest-cov](https://pypi.org/project/pytest-cov)|0.009| | ||
| |pypi|[pytest-flake8](https://pypi.org/project/pytest-flake8)|0.009| | ||
| |pypi|[pytest-checkdocs](https://pypi.org/project/pytest-checkdocs)|0.009| | ||
| |pypi|[pytest](https://pypi.org/project/pytest)|0.009| | ||
| |pypi|[ipython](https://pypi.org/project/ipython)|0.009| | ||
| |pypi|[rst.linker](https://pypi.org/project/rst.linker)|0.009| | ||
| |pypi|[jaraco.packaging](https://pypi.org/project/jaraco.packaging)|0.009| | ||
| |pypi|[sphinx](https://pypi.org/project/sphinx)|0.009| | ||
| |pypi|[typing-extensions](https://pypi.org/project/typing-extensions)|0.009| | ||
| |pypi|[zipp](https://pypi.org/project/zipp)|0.009| | ||
| |pypi|[click](https://palletsprojects.com/p/click/)|0.003| | ||
| |pypi|[importlib-metadata](https://github.com/python/importlib_metadata)|0.002| | ||
|
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||
|
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| > Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed. | ||
|
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| - Generated by [CiteLang](https://github.com/vsoch/citelang) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,102 @@ | ||
| { | ||
| "setup.py": { | ||
| "github/enthought/vpsearch": { | ||
| "credit": 0.01, | ||
| "url": null | ||
| } | ||
| }, | ||
| "pypi": { | ||
| "click": { | ||
| "credit": 0.003300000000000025, | ||
| "url": "https://palletsprojects.com/p/click/" | ||
| }, | ||
| "numpy": { | ||
| "credit": 0.33, | ||
| "url": "https://www.numpy.org" | ||
| }, | ||
| "parasail": { | ||
| "credit": 0.33, | ||
| "url": "https://github.com/jeffdaily/parasail-python" | ||
| }, | ||
| "importlib-metadata": { | ||
| "credit": 0.00163350000000001, | ||
| "url": "https://github.com/python/importlib_metadata" | ||
| }, | ||
| "colorama": { | ||
| "credit": 0.16335, | ||
| "url": "https://github.com/tartley/colorama" | ||
| }, | ||
| "importlib-resources": { | ||
| "credit": 0.00898425, | ||
| "url": "https://github.com/python/importlib_resources" | ||
| }, | ||
| "pytest-mypy": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest-mypy" | ||
| }, | ||
| "pytest-black": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest-black" | ||
| }, | ||
| "pytest-perf": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest-perf" | ||
| }, | ||
| "flufl.flake8": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/flufl.flake8" | ||
| }, | ||
| "pyfakefs": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pyfakefs" | ||
| }, | ||
| "packaging": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/packaging" | ||
| }, | ||
| "pytest-enabler": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest-enabler" | ||
| }, | ||
| "pytest-cov": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest-cov" | ||
| }, | ||
| "pytest-flake8": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest-flake8" | ||
| }, | ||
| "pytest-checkdocs": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest-checkdocs" | ||
| }, | ||
| "pytest": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/pytest" | ||
| }, | ||
| "ipython": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/ipython" | ||
| }, | ||
| "rst.linker": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/rst.linker" | ||
| }, | ||
| "jaraco.packaging": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/jaraco.packaging" | ||
| }, | ||
| "sphinx": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/sphinx" | ||
| }, | ||
| "typing-extensions": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/typing-extensions" | ||
| }, | ||
| "zipp": { | ||
| "credit": 0.00898425, | ||
| "url": "https://pypi.org/project/zipp" | ||
| } | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
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| import os | ||
| import sys | ||
|
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| from setuptools import find_packages | ||
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| from distutils.core import setup | ||
| from distutils.extension import Extension | ||
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| import numpy as np | ||
| import parasail | ||
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| from Cython.Build import cythonize | ||
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| def get_long_description(): | ||
| with open("README.md") as fp: | ||
| return fp.read() | ||
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| if sys.platform == 'darwin': | ||
| # Use libc++ instead of libstdc++ on Mac OS. The latter has been deprecated | ||
| # since XCode 8 and is removed in XCode 10 (which ships with mac OS | ||
| # Mojave). | ||
| CPP_BASE_ARGS = ['-stdlib=libc++', '-mmacosx-version-min=10.9'] | ||
| LINK_ARGS = [] | ||
| else: | ||
| CPP_BASE_ARGS = [] | ||
| # Recent versions of ld will set RUNPATH rather than RPATH, which breaks | ||
| # Cython wrappers that expose functionality from a shared object file. | ||
| LINK_ARGS = ['-Wl,--disable-new-dtags'] | ||
|
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|
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| setup( | ||
| name='vpsearch', | ||
| version='0.2.0.dev0', | ||
| author='Enthought', | ||
| author_email='info@enthought.com', | ||
| url='https://github.com/enthought/vpsearch', | ||
| description='Global-Global genetic database search.', | ||
| long_description=get_long_description(), | ||
| long_description_content_type='text/markdown', | ||
| classifiers=[ | ||
| "Development Status :: 3 - Alpha", | ||
| "Intended Audience :: Science/Research", | ||
| "License :: OSI Approved :: BSD License", | ||
| "Programming Language :: Python :: 3", | ||
| "Programming Language :: Python :: 3.6", | ||
| "Programming Language :: Python :: 3.7", | ||
| "Programming Language :: Python :: 3.8", | ||
| "Programming Language :: Python :: 3.9", | ||
| "Programming Language :: Python :: 3.10", | ||
| "Programming Language :: Cython", | ||
| "Topic :: Scientific/Engineering", | ||
| ], | ||
| license="BSD", | ||
| platforms=["Linux", "Mac OS-X", "Unix"], | ||
| ext_modules=cythonize([ | ||
| Extension( | ||
| 'vpsearch._vpsearch', | ||
| sources=['vpsearch/_vpsearch.pyx'], | ||
| include_dirs=[np.get_include(), | ||
| parasail.get_include(), | ||
| 'vpsearch'], | ||
| language='c++', | ||
| extra_compile_args=CPP_BASE_ARGS + ['-std=c++11'], | ||
| extra_link_args=CPP_BASE_ARGS + LINK_ARGS, | ||
| depends=[ | ||
| 'vpsearch/fastqueue.hpp', | ||
| 'vpsearch/parasail.pxi', | ||
| ] | ||
| ), | ||
| ]), | ||
| entry_points={ | ||
| 'console_scripts': [ | ||
| 'vpsearch=vpsearch._cli:main', | ||
| ], | ||
| }, | ||
| install_requires=[ | ||
| "click", | ||
| "numpy", | ||
| # Pin Parasail to a specific version. See | ||
| # https://github.com/enthought/vpsearch/pull/37 for more information. | ||
| "parasail==1.3.3", | ||
| ], | ||
| extras_require={ | ||
| "docs": [ | ||
| "sphinx", | ||
| "enthought-sphinx-theme", | ||
| ] | ||
| }, | ||
| packages=find_packages(), | ||
| ) |
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