Automated deployment to update software database 2021-03-14 (#208)

Co-authored-by: github-actions <github-actions@users.noreply.github.com>
rseng · Mar 14, 2021 · a8355af · a8355af
1 parent a22bf66
commit a8355af
Show file tree

Hide file tree

Showing 66 changed files with 16,749 additions and 9,511 deletions.
diff --git a/database/github/BDI-pathogens/OpenABM-Covid19-model-paper/metadata.json b/database/github/BDI-pathogens/OpenABM-Covid19-model-paper/metadata.json
@@ -0,0 +1,33 @@
+{
+    "parser": "github",
+    "uid": "github/BDI-pathogens/OpenABM-Covid19-model-paper",
+    "url": "https://github.com/BDI-pathogens/OpenABM-Covid19-model-paper",
+    "data": {
+        "timestamp": "2021-03-14 00:22:52.633016",
+        "name": "OpenABM-Covid19-model-paper",
+        "url": "https://api.github.com/repos/BDI-pathogens/OpenABM-Covid19-model-paper",
+        "full_name": "BDI-pathogens/OpenABM-Covid19-model-paper",
+        "html_url": "https://github.com/BDI-pathogens/OpenABM-Covid19-model-paper",
+        "private": false,
+        "description": "Figures for the paper describing the OpenABM-Covid19 model",
+        "created_at": "2020-08-14T14:30:46Z",
+        "updated_at": "2021-03-08T11:52:22Z",
+        "clone_url": "https://github.com/BDI-pathogens/OpenABM-Covid19-model-paper.git",
+        "homepage": null,
+        "size": 3144,
+        "stargazers_count": 3,
+        "watchers_count": 3,
+        "language": "Jupyter Notebook",
+        "open_issues_count": 0,
+        "license": null,
+        "subscribers_count": 6,
+        "owner": {
+            "html_url": "https://github.com/BDI-pathogens",
+            "avatar_url": "https://avatars.githubusercontent.com/u/16707812?v=4",
+            "login": "BDI-pathogens",
+            "type": "Organization"
+        },
+        "topics": []
+    },
+    "doi": "10.1101/2020.09.16.20195925"
+}
diff --git a/database/github/HUST-NingKang-Lab/ONN4MST/metadata.json b/database/github/HUST-NingKang-Lab/ONN4MST/metadata.json
@@ -0,0 +1,43 @@
+{
+    "parser": "github",
+    "uid": "github/HUST-NingKang-Lab/ONN4MST",
+    "url": "https://github.com/HUST-NingKang-Lab/ONN4MST",
+    "data": {
+        "timestamp": "2021-03-14 00:22:53.029627",
+        "name": "ONN4MST",
+        "url": "https://api.github.com/repos/HUST-NingKang-Lab/ONN4MST",
+        "full_name": "HUST-NingKang-Lab/ONN4MST",
+        "html_url": "https://github.com/HUST-NingKang-Lab/ONN4MST",
+        "private": false,
+        "description": "Ontology-aware Neural Network for Mircobiome Data Mining!",
+        "created_at": "2020-02-22T06:07:26Z",
+        "updated_at": "2021-01-25T06:48:58Z",
+        "clone_url": "https://github.com/HUST-NingKang-Lab/ONN4MST.git",
+        "homepage": "",
+        "size": 117030,
+        "stargazers_count": 2,
+        "watchers_count": 2,
+        "language": "Python",
+        "open_issues_count": 0,
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/HUST-NingKang-Lab",
+            "avatar_url": "https://avatars.githubusercontent.com/u/24222262?v=4",
+            "login": "HUST-NingKang-Lab",
+            "type": "Organization"
+        },
+        "topics": [
+            "neural-network",
+            "microbiome-model",
+            "ontology-search"
+        ]
+    },
+    "doi": "10.1101/2020.11.01.364208"
+}
diff --git a/database/github/LINNAE-project/SFB-Annotator/metadata.json b/database/github/LINNAE-project/SFB-Annotator/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/LINNAE-project/SFB-Annotator",
+    "url": "https://github.com/LINNAE-project/SFB-Annotator",
+    "data": {
+        "timestamp": "2021-03-14 00:22:46.147987",
+        "name": "SFB-Annotator",
+        "url": "https://api.github.com/repos/LINNAE-project/SFB-Annotator",
+        "full_name": "LINNAE-project/SFB-Annotator",
+        "html_url": "https://github.com/LINNAE-project/SFB-Annotator",
+        "private": false,
+        "description": "This web app is intended for demo purposes only!",
+        "created_at": "2020-05-11T12:37:46Z",
+        "updated_at": "2021-03-12T20:09:43Z",
+        "clone_url": "https://github.com/LINNAE-project/SFB-Annotator.git",
+        "homepage": "",
+        "size": 35069,
+        "stargazers_count": 1,
+        "watchers_count": 1,
+        "language": "JavaScript",
+        "open_issues_count": 19,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 3,
+        "owner": {
+            "html_url": "https://github.com/LINNAE-project",
+            "avatar_url": "https://avatars.githubusercontent.com/u/65170433?v=4",
+            "login": "LINNAE-project",
+            "type": "Organization"
+        },
+        "topics": []
+    },
+    "doi": "10.5281/zenodo.4602263"
+}
diff --git a/database/github/Sydney-Informatics-Hub/OmixLitMiner/metadata.json b/database/github/Sydney-Informatics-Hub/OmixLitMiner/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/Sydney-Informatics-Hub/OmixLitMiner",
+    "url": "https://github.com/Sydney-Informatics-Hub/OmixLitMiner",
+    "data": {
+        "timestamp": "2021-03-14 00:22:54.663413",
+        "name": "OmixLitMiner",
+        "url": "https://api.github.com/repos/Sydney-Informatics-Hub/OmixLitMiner",
+        "full_name": "Sydney-Informatics-Hub/OmixLitMiner",
+        "html_url": "https://github.com/Sydney-Informatics-Hub/OmixLitMiner",
+        "private": false,
+        "description": "A bioinformatics tool for prioritising biological leads from omics data using literature mining.",
+        "created_at": "2019-06-21T00:46:15Z",
+        "updated_at": "2021-01-26T19:19:28Z",
+        "clone_url": "https://github.com/Sydney-Informatics-Hub/OmixLitMiner.git",
+        "homepage": "",
+        "size": 6923,
+        "stargazers_count": 2,
+        "watchers_count": 2,
+        "language": "R",
+        "open_issues_count": 2,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/Sydney-Informatics-Hub",
+            "avatar_url": "https://avatars.githubusercontent.com/u/38518764?v=4",
+            "login": "Sydney-Informatics-Hub",
+            "type": "Organization"
+        },
+        "topics": []
+    },
+    "doi": "10.3390/IJMS21041374"
+}
diff --git a/database/github/cabb99/open3spn2/metadata.json b/database/github/cabb99/open3spn2/metadata.json
@@ -0,0 +1,43 @@
+{
+    "parser": "github",
+    "uid": "github/cabb99/open3spn2",
+    "url": "https://github.com/cabb99/open3spn2",
+    "data": {
+        "timestamp": "2021-03-14 00:22:52.200234",
+        "name": "open3spn2",
+        "url": "https://api.github.com/repos/cabb99/open3spn2",
+        "full_name": "cabb99/open3spn2",
+        "html_url": "https://github.com/cabb99/open3spn2",
+        "private": false,
+        "description": "An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM",
+        "created_at": "2019-02-27T23:32:07Z",
+        "updated_at": "2021-03-02T22:45:05Z",
+        "clone_url": "https://github.com/cabb99/open3spn2.git",
+        "homepage": null,
+        "size": 20059,
+        "stargazers_count": 9,
+        "watchers_count": 9,
+        "language": "Python",
+        "open_issues_count": 1,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 3,
+        "owner": {
+            "html_url": "https://github.com/cabb99",
+            "avatar_url": "https://avatars.githubusercontent.com/u/2429859?v=4",
+            "login": "cabb99",
+            "type": "User"
+        },
+        "topics": [
+            "dna",
+            "forcefield",
+            "openmm"
+        ]
+    },
+    "doi": "10.1101/2020.09.07.285759"
+}
diff --git a/database/github/e-mental-health/data-processing/metadata.json b/database/github/e-mental-health/data-processing/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/e-mental-health/data-processing",
+    "url": "https://github.com/e-mental-health/data-processing",
+    "data": {
+        "timestamp": "2021-03-14 00:22:45.717395",
+        "name": "data-processing",
+        "url": "https://api.github.com/repos/e-mental-health/data-processing",
+        "full_name": "e-mental-health/data-processing",
+        "html_url": "https://github.com/e-mental-health/data-processing",
+        "private": false,
+        "description": "Data processing scripts for the project What Works When for Whom?",
+        "created_at": "2018-04-13T16:26:52Z",
+        "updated_at": "2021-03-10T10:16:58Z",
+        "clone_url": "https://github.com/e-mental-health/data-processing.git",
+        "homepage": "https://www.research-software.nl/projects/what-works-when-for-whom",
+        "size": 712,
+        "stargazers_count": 0,
+        "watchers_count": 0,
+        "language": "Jupyter Notebook",
+        "open_issues_count": 1,
+        "license": {
+            "key": "other",
+            "name": "Other",
+            "spdx_id": "NOASSERTION",
+            "url": null,
+            "node_id": "MDc6TGljZW5zZTA="
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/e-mental-health",
+            "avatar_url": "https://avatars.githubusercontent.com/u/38315264?v=4",
+            "login": "e-mental-health",
+            "type": "Organization"
+        },
+        "topics": []
+    },
+    "doi": "10.5281/zenodo.4592393"
+}
diff --git a/database/github/e-mental-health/orange-hackathon/metadata.json b/database/github/e-mental-health/orange-hackathon/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/e-mental-health/orange-hackathon",
+    "url": "https://github.com/e-mental-health/orange-hackathon",
+    "data": {
+        "timestamp": "2021-03-14 00:22:45.286521",
+        "name": "orange-hackathon",
+        "url": "https://api.github.com/repos/e-mental-health/orange-hackathon",
+        "full_name": "e-mental-health/orange-hackathon",
+        "html_url": "https://github.com/e-mental-health/orange-hackathon",
+        "private": false,
+        "description": "Orange modules for text processing in the project What Works When for Whom? ",
+        "created_at": "2019-08-29T10:13:03Z",
+        "updated_at": "2021-03-10T10:16:29Z",
+        "clone_url": "https://github.com/e-mental-health/orange-hackathon.git",
+        "homepage": "https://www.research-software.nl/projects/what-works-when-for-whom",
+        "size": 2306,
+        "stargazers_count": 0,
+        "watchers_count": 0,
+        "language": "Jupyter Notebook",
+        "open_issues_count": 3,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/e-mental-health",
+            "avatar_url": "https://avatars.githubusercontent.com/u/38315264?v=4",
+            "login": "e-mental-health",
+            "type": "Organization"
+        },
+        "topics": []
+    },
+    "doi": "10.5281/zenodo.4592361"
+}
diff --git a/database/github/fakedrtom/oncogemini/metadata.json b/database/github/fakedrtom/oncogemini/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/fakedrtom/oncogemini",
+    "url": "https://github.com/fakedrtom/oncogemini",
+    "data": {
+        "timestamp": "2021-03-14 00:22:54.222299",
+        "name": "oncogemini",
+        "url": "https://api.github.com/repos/fakedrtom/oncogemini",
+        "full_name": "fakedrtom/oncogemini",
+        "html_url": "https://github.com/fakedrtom/oncogemini",
+        "private": false,
+        "description": null,
+        "created_at": "2018-04-10T18:40:36Z",
+        "updated_at": "2021-01-28T20:36:01Z",
+        "clone_url": "https://github.com/fakedrtom/oncogemini.git",
+        "homepage": null,
+        "size": 56885,
+        "stargazers_count": 5,
+        "watchers_count": 5,
+        "language": "Python",
+        "open_issues_count": 0,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/fakedrtom",
+            "avatar_url": "https://avatars.githubusercontent.com/u/27868365?v=4",
+            "login": "fakedrtom",
+            "type": "User"
+        },
+        "topics": []
+    },
+    "doi": "10.1101/2020.03.10.979591"
+}
diff --git a/database/github/fumi-github/omicwas/metadata.json b/database/github/fumi-github/omicwas/metadata.json
@@ -0,0 +1,33 @@
+{
+    "parser": "github",
+    "uid": "github/fumi-github/omicwas",
+    "url": "https://github.com/fumi-github/omicwas",
+    "data": {
+        "timestamp": "2021-03-14 00:22:55.120637",
+        "name": "omicwas",
+        "url": "https://api.github.com/repos/fumi-github/omicwas",
+        "full_name": "fumi-github/omicwas",
+        "html_url": "https://github.com/fumi-github/omicwas",
+        "private": false,
+        "description": "Cell-Type-Specific Disease Association Testing in Bulk Omics Experiments",
+        "created_at": "2019-10-12T21:47:10Z",
+        "updated_at": "2021-02-02T01:27:54Z",
+        "clone_url": "https://github.com/fumi-github/omicwas.git",
+        "homepage": null,
+        "size": 7932,
+        "stargazers_count": 1,
+        "watchers_count": 1,
+        "language": "R",
+        "open_issues_count": 0,
+        "license": null,
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/fumi-github",
+            "avatar_url": "https://avatars.githubusercontent.com/u/724031?v=4",
+            "login": "fumi-github",
+            "type": "User"
+        },
+        "topics": []
+    },
+    "doi": "10.1101/2020.06.18.158758"
+}