Automated deployment to update software database 2021-09-26 (#242)

Co-authored-by: github-actions <github-actions@users.noreply.github.com>
rseng · Sep 26, 2021 · c1b7b41 · c1b7b41
1 parent 5a64712
commit c1b7b41
Show file tree

Hide file tree

Showing 57 changed files with 6,343 additions and 2 deletions.
diff --git a/database/github/IKNL/vantage6/metadata.json b/database/github/IKNL/vantage6/metadata.json
@@ -0,0 +1,44 @@
+{
+    "parser": "github",
+    "uid": "github/IKNL/vantage6",
+    "url": "https://github.com/IKNL/vantage6",
+    "data": {
+        "timestamp": "2021-09-26 00:35:56.262808",
+        "name": "vantage6",
+        "url": "https://api.github.com/repos/IKNL/vantage6",
+        "full_name": "IKNL/vantage6",
+        "html_url": "https://github.com/IKNL/vantage6",
+        "private": false,
+        "description": "Docker CLI package for the vantage6 infrastructure",
+        "created_at": "2018-02-05T08:27:48Z",
+        "updated_at": "2021-07-07T14:15:32Z",
+        "clone_url": "https://github.com/IKNL/vantage6.git",
+        "homepage": "https://vantage6.ai",
+        "size": 16156,
+        "stargazers_count": 19,
+        "watchers_count": 19,
+        "language": "Python",
+        "open_issues_count": 5,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 7,
+        "owner": {
+            "html_url": "https://github.com/IKNL",
+            "avatar_url": "https://avatars.githubusercontent.com/u/39300115?v=4",
+            "login": "IKNL",
+            "type": "Organization"
+        },
+        "topics": [
+            "federated-learning",
+            "multi-party-computation",
+            "data-science",
+            "distributed-learning"
+        ]
+    },
+    "doi": "10.5281/zenodo.3686944"
+}
diff --git a/database/github/JGCRI/plutus/metadata.json b/database/github/JGCRI/plutus/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/JGCRI/plutus",
+    "url": "https://github.com/JGCRI/plutus",
+    "data": {
+        "timestamp": "2021-09-26 00:35:54.221440",
+        "name": "plutus",
+        "url": "https://api.github.com/repos/JGCRI/plutus",
+        "full_name": "JGCRI/plutus",
+        "html_url": "https://github.com/JGCRI/plutus",
+        "private": false,
+        "description": null,
+        "created_at": "2021-03-05T20:15:22Z",
+        "updated_at": "2021-09-21T20:00:26Z",
+        "clone_url": "https://github.com/JGCRI/plutus.git",
+        "homepage": "https://jgcri.github.io/plutus/",
+        "size": 4143,
+        "stargazers_count": 1,
+        "watchers_count": 1,
+        "language": "R",
+        "open_issues_count": 1,
+        "license": {
+            "key": "bsd-2-clause",
+            "name": "BSD 2-Clause \"Simplified\" License",
+            "spdx_id": "BSD-2-Clause",
+            "url": "https://api.github.com/licenses/bsd-2-clause",
+            "node_id": "MDc6TGljZW5zZTQ="
+        },
+        "subscribers_count": 8,
+        "owner": {
+            "html_url": "https://github.com/JGCRI",
+            "avatar_url": "https://avatars.githubusercontent.com/u/8431983?v=4",
+            "login": "JGCRI",
+            "type": "Organization"
+        },
+        "topics": []
+    },
+    "doi": "https://doi.org/10.5281/zenodo.5517802"
+}
diff --git a/database/github/Materials-Consortia/optimade-python-tools/metadata.json b/database/github/Materials-Consortia/optimade-python-tools/metadata.json
@@ -0,0 +1,45 @@
+{
+    "parser": "github",
+    "uid": "github/Materials-Consortia/optimade-python-tools",
+    "url": "https://github.com/Materials-Consortia/optimade-python-tools",
+    "data": {
+        "timestamp": "2021-09-26 00:35:53.205837",
+        "name": "optimade-python-tools",
+        "url": "https://api.github.com/repos/Materials-Consortia/optimade-python-tools",
+        "full_name": "Materials-Consortia/optimade-python-tools",
+        "html_url": "https://github.com/Materials-Consortia/optimade-python-tools",
+        "private": false,
+        "description": "Tools for implementing and consuming OPTIMADE APIs in Python",
+        "created_at": "2018-06-05T21:00:07Z",
+        "updated_at": "2021-09-24T08:37:32Z",
+        "clone_url": "https://github.com/Materials-Consortia/optimade-python-tools.git",
+        "homepage": "https://www.optimade.org/optimade-python-tools/",
+        "size": 10722,
+        "stargazers_count": 30,
+        "watchers_count": 30,
+        "language": "Python",
+        "open_issues_count": 60,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 7,
+        "owner": {
+            "html_url": "https://github.com/Materials-Consortia",
+            "avatar_url": "https://avatars.githubusercontent.com/u/23107754?v=4",
+            "login": "Materials-Consortia",
+            "type": "Organization"
+        },
+        "topics": [
+            "optimade-specification",
+            "optimade-python",
+            "optimade-api",
+            "openapi",
+            "python"
+        ]
+    },
+    "doi": "https://doi.org/10.5281/zenodo.5517803"
+}
diff --git a/database/github/churchmanlab/genewalk/metadata.json b/database/github/churchmanlab/genewalk/metadata.json
@@ -0,0 +1,42 @@
+{
+    "parser": "github",
+    "uid": "github/churchmanlab/genewalk",
+    "url": "https://github.com/churchmanlab/genewalk",
+    "data": {
+        "timestamp": "2021-09-26 00:36:00.032376",
+        "name": "genewalk",
+        "url": "https://api.github.com/repos/churchmanlab/genewalk",
+        "full_name": "churchmanlab/genewalk",
+        "html_url": "https://github.com/churchmanlab/genewalk",
+        "private": false,
+        "description": "GeneWalk identifies relevant gene functions for a biological context using network representation learning",
+        "created_at": "2019-01-22T20:59:55Z",
+        "updated_at": "2021-07-14T23:56:05Z",
+        "clone_url": "https://github.com/churchmanlab/genewalk.git",
+        "homepage": "https://churchman.med.harvard.edu/genewalk",
+        "size": 405,
+        "stargazers_count": 103,
+        "watchers_count": 103,
+        "language": "Python",
+        "open_issues_count": 0,
+        "license": {
+            "key": "bsd-2-clause",
+            "name": "BSD 2-Clause \"Simplified\" License",
+            "spdx_id": "BSD-2-Clause",
+            "url": "https://api.github.com/licenses/bsd-2-clause",
+            "node_id": "MDc6TGljZW5zZTQ="
+        },
+        "subscribers_count": 8,
+        "owner": {
+            "html_url": "https://github.com/churchmanlab",
+            "avatar_url": "https://avatars.githubusercontent.com/u/1781555?v=4",
+            "login": "churchmanlab",
+            "type": "Organization"
+        },
+        "topics": [
+            "functional-genomics",
+            "machine-learning-algorithm"
+        ]
+    },
+    "doi": "10.1186/s13059-021-02264-8"
+}
diff --git a/database/github/cobilab/RFSC/metadata.json b/database/github/cobilab/RFSC/metadata.json
@@ -0,0 +1,38 @@
+{
+    "parser": "github",
+    "uid": "github/cobilab/RFSC",
+    "url": "https://github.com/cobilab/RFSC",
+    "data": {
+        "timestamp": "2021-09-26 00:36:00.262481",
+        "name": "RFSC",
+        "url": "https://api.github.com/repos/cobilab/RFSC",
+        "full_name": "cobilab/RFSC",
+        "html_url": "https://github.com/cobilab/RFSC",
+        "private": false,
+        "description": "Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples",
+        "created_at": "2021-03-08T19:00:12Z",
+        "updated_at": "2021-09-24T06:27:19Z",
+        "clone_url": "https://github.com/cobilab/RFSC.git",
+        "homepage": "",
+        "size": 48366,
+        "stargazers_count": 4,
+        "watchers_count": 4,
+        "language": "Shell",
+        "open_issues_count": 0,
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/cobilab",
+            "avatar_url": "https://avatars.githubusercontent.com/u/49339287?v=4",
+            "login": "cobilab",
+            "type": "Organization"
+        },
+        "topics": []
+    }
+}
diff --git a/database/github/dmey/synthia/metadata.json b/database/github/dmey/synthia/metadata.json
@@ -0,0 +1,60 @@
+{
+    "parser": "github",
+    "uid": "github/dmey/synthia",
+    "url": "https://github.com/dmey/synthia",
+    "data": {
+        "timestamp": "2021-09-26 00:35:52.932200",
+        "name": "synthia",
+        "url": "https://api.github.com/repos/dmey/synthia",
+        "full_name": "dmey/synthia",
+        "html_url": "https://github.com/dmey/synthia",
+        "private": false,
+        "description": "\ud83d\udcc8 \ud83d\udc0d Multidimensional synthetic data generation in Python",
+        "created_at": "2020-03-01T18:04:55Z",
+        "updated_at": "2021-09-25T16:34:49Z",
+        "clone_url": "https://github.com/dmey/synthia.git",
+        "homepage": "https://dmey.github.io/synthia",
+        "size": 20690,
+        "stargazers_count": 13,
+        "watchers_count": 13,
+        "language": "Python",
+        "open_issues_count": 0,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/dmey",
+            "avatar_url": "https://avatars.githubusercontent.com/u/26348635?v=4",
+            "login": "dmey",
+            "type": "User"
+        },
+        "topics": [
+            "synthetic-data",
+            "copula",
+            "fpca",
+            "machine-learning",
+            "data-science",
+            "data-generation",
+            "xarray",
+            "weather",
+            "climate",
+            "finance",
+            "data-modelling",
+            "principal-component-analysis",
+            "dependency-analysis",
+            "dependency-modeling",
+            "statistics",
+            "augmentation",
+            "oversampling",
+            "data-augmentation",
+            "functional-data",
+            "data-generator"
+        ]
+    },
+    "doi": "https://doi.org/10.5281/zenodo.5358432"
+}
diff --git a/database/github/dondi/GRNsight/metadata.json b/database/github/dondi/GRNsight/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/dondi/GRNsight",
+    "url": "https://github.com/dondi/GRNsight",
+    "data": {
+        "timestamp": "2021-09-26 00:35:59.783299",
+        "name": "GRNsight",
+        "url": "https://api.github.com/repos/dondi/GRNsight",
+        "full_name": "dondi/GRNsight",
+        "html_url": "https://github.com/dondi/GRNsight",
+        "private": false,
+        "description": "Web app and service for modeling and visualizing gene regulatory networks.",
+        "created_at": "2014-01-24T05:16:11Z",
+        "updated_at": "2021-09-23T00:27:55Z",
+        "clone_url": "https://github.com/dondi/GRNsight.git",
+        "homepage": "http://dondi.github.io/GRNsight",
+        "size": 339719,
+        "stargazers_count": 14,
+        "watchers_count": 14,
+        "language": "JavaScript",
+        "open_issues_count": 51,
+        "license": {
+            "key": "bsd-3-clause",
+            "name": "BSD 3-Clause \"New\" or \"Revised\" License",
+            "spdx_id": "BSD-3-Clause",
+            "url": "https://api.github.com/licenses/bsd-3-clause",
+            "node_id": "MDc6TGljZW5zZTU="
+        },
+        "subscribers_count": 6,
+        "owner": {
+            "html_url": "https://github.com/dondi",
+            "avatar_url": "https://avatars.githubusercontent.com/u/382242?v=4",
+            "login": "dondi",
+            "type": "User"
+        },
+        "topics": []
+    },
+    "doi": "10.5281/zenodo.1287498"
+}
diff --git a/database/github/ecological-cities/home2park/metadata.json b/database/github/ecological-cities/home2park/metadata.json
@@ -0,0 +1,45 @@
+{
+    "parser": "github",
+    "uid": "github/ecological-cities/home2park",
+    "url": "https://github.com/ecological-cities/home2park",
+    "data": {
+        "timestamp": "2021-09-26 00:35:54.508369",
+        "name": "home2park",
+        "url": "https://api.github.com/repos/ecological-cities/home2park",
+        "full_name": "ecological-cities/home2park",
+        "html_url": "https://github.com/ecological-cities/home2park",
+        "private": false,
+        "description": "home2park: Assess the spatial provision of urban parks",
+        "created_at": "2020-12-15T08:59:32Z",
+        "updated_at": "2021-09-21T01:10:25Z",
+        "clone_url": "https://github.com/ecological-cities/home2park.git",
+        "homepage": "https://ecological-cities.github.io/home2park/",
+        "size": 100651,
+        "stargazers_count": 3,
+        "watchers_count": 3,
+        "language": "HTML",
+        "open_issues_count": 0,
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/ecological-cities",
+            "avatar_url": "https://avatars.githubusercontent.com/u/65454754?v=4",
+            "login": "ecological-cities",
+            "type": "Organization"
+        },
+        "topics": [
+            "cities",
+            "recreation",
+            "parks",
+            "geoinformatics",
+            "spatial"
+        ]
+    },
+    "doi": "https://doi.org/10.5281/zenodo.5516698"
+}