v4.4.0

[Neves-P]

DAISIE 4.4.0

• No longer include patched version of boost/numeric/odeint/stepper/bulirsch_stoer.hpp, address the issue by passing previously uninitialised variable as boost::units::quantity<boost::units::si::dimensionless, double>.
• Document return type of exported Rcpp functions.
• Move all internal non-error printing to console message() and warning(). Add internal functions to address this. verbose variable is now numeric, varying from 0 to 3. Increasing values increase amount of messages to be printed. Change default of printing some output to golden rule of silence verbose == 0. To print again, set verbose >= 1.
• Remove calls to options(warn = -1) that suppress warnings in non standard way. Use suppressWarnings() where appropriate.
• Safely restore graphics settings after plot.
• Fix references in DESCRIPTION.
• Remove internal (unnecessary) calls to internal functions via :::.
• No longer use roxygen2 tag internal to document without index but use noRd instead. are_area_pars() is now internal.
• Replace \dontrun examples in documentation with \donttest. Speed up examples.
• License package C++ source files as BSL-1.0 (c) Hanno Hildenbrandt, FORTRAN files as BSL-1.0 (c) Rampal S. Etienne.
• Add LICENSE.note, inst/COPYRIGHTS to clarify license and copyrights. Pipe such files in DESCRIPTION.

[codecov-commenter]

Codecov Report

Merging #158 (4640b18) into master (22d2737) will decrease coverage by 0.47%.
The diff coverage is 33.59%.

❗ Current head 4640b18 differs from pull request most recent head ebf13e6. Consider uploading reports for the commit ebf13e6 to get more accurate results

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@@            Coverage Diff             @@
##           master     #158      +/-   ##
==========================================
- Coverage   69.01%   68.54%   -0.47%     
==========================================
  Files          79       78       -1     
  Lines        8107     7964     -143     
==========================================
- Hits         5595     5459     -136     
+ Misses       2512     2505       -7     

Impacted Files	Coverage Δ
R/DAISIE_ML4.R	15.75% <0.00%> (+0.72%)	⬆️
R/DAISIE_ML_IW.R	0.00% <0.00%> (ø)
R/DAISIE_PEI.R	0.00% <0.00%> (ø)
R/DAISIE_SR_ML_CS.R	0.00% <0.00%> (ø)
R/DAISIE_SR_sim.R	87.50% <0.00%> (ø)
R/DAISIE_check_format.R	61.22% <ø> (ø)
R/DAISIE_dataprep.R	78.83% <0.00%> (ø)
R/DAISIE_format_IW.R	77.95% <ø> (ø)
R/DAISIE_make_archipelago.R	0.00% <0.00%> (ø)
R/DAISIE_max_rates.R	100.00% <ø> (ø)
... and 34 more

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