black

examples/freezer.py

@@ -141,7 +141,8 @@ def add_to_parent_tier(self, parents, parents_per_gp, items_per_parent, items):
     col = 1
     samples_created = samples_created + box_cols
     print(
-        f" created {box_cols} samples / {total_samples_to_create}", file=sys.stderr,
+        f" created {box_cols} samples / {total_samples_to_create}",
+        file=sys.stderr,
     )
 
     ## we can move 12 samples at a time

examples/tree_upload.py

@@ -548,8 +548,10 @@ def _populateFromLog(itemType, folderDict):
             )
         )
         docname = "eCAT gallery images for documents in " + os.path.basename(parentDir)
-        folder_link = "Gallery Images in Documents in this folder:\n<docId={}>\n".format(
-            gifolders[parentDir]
+        folder_link = (
+            "Gallery Images in Documents in this folder:\n<docId={}>\n".format(
+                gifolders[parentDir]
+            )
         )
         new_document_id = -1
         if not dirName in sdocs:

rspace_client/client_base.py

@@ -99,7 +99,9 @@ def doDelete(self, path, resource_id):
         """
         numeric_id = self._get_numeric_record_id(resource_id)
         return self.retrieve_api_results(
-            "/{}/{}".format(path, numeric_id), content_type=None, request_type="DELETE",
+            "/{}/{}".format(path, numeric_id),
+            content_type=None,
+            request_type="DELETE",
         )
 
     def retrieve_api_results(
@@ -205,7 +207,9 @@ def serr(self, msg: str):
         print(msg, file=sys.stderr)
 
     def _stream(
-        self, endpoint: str, pagination: Pagination = Pagination(),
+        self,
+        endpoint: str,
+        pagination: Pagination = Pagination(),
     ):
         """
         Yields items, making paginated requests to the server as each page

rspace_client/eln/eln.py

@@ -97,7 +97,8 @@ def get_document_csv(self, doc_id):
         """
         numeric_doc_id = self._get_numeric_record_id(doc_id)
         return self.retrieve_api_results(
-            "/documents/{}".format(numeric_doc_id), content_type="text/csv",
+            "/documents/{}".format(numeric_doc_id),
+            content_type="text/csv",
         )
 
     def create_document(
@@ -244,7 +245,9 @@ def update_document(
             data["fields"] = fields
         numeric_doc_id = self._get_numeric_record_id(document_id)
         return self.retrieve_api_results(
-            "/documents/{}".format(numeric_doc_id), request_type="PUT", params=data,
+            "/documents/{}".format(numeric_doc_id),
+            request_type="PUT",
+            params=data,
         )
 
     # Sharing methods
@@ -684,7 +687,8 @@ def publish_form(self, form_id):
         """
         numeric_doc_id = self._get_numeric_record_id(form_id)
         return self.retrieve_api_results(
-            "/forms/{}/publish".format(numeric_doc_id), request_type="PUT",
+            "/forms/{}/publish".format(numeric_doc_id),
+            request_type="PUT",
         )
 
     def unpublish_form(self, form_id):
@@ -696,7 +700,8 @@ def unpublish_form(self, form_id):
         """
         numeric_doc_id = self._get_numeric_record_id(form_id)
         return self.retrieve_api_results(
-            "/forms/{}/unpublish".format(numeric_doc_id), request_type="PUT",
+            "/forms/{}/unpublish".format(numeric_doc_id),
+            request_type="PUT",
         )
 
     def share_form(self, form_id):
@@ -708,7 +713,8 @@ def share_form(self, form_id):
         """
         numeric_doc_id = self._get_numeric_record_id(form_id)
         return self.retrieve_api_results(
-            "/forms/{}/share".format(numeric_doc_id), request_type="PUT",
+            "/forms/{}/share".format(numeric_doc_id),
+            request_type="PUT",
         )
 
     def unshare_form(self, form_id):
@@ -721,7 +727,8 @@ def unshare_form(self, form_id):
         """
         numeric_doc_id = self._get_numeric_record_id(form_id)
         return self.retrieve_api_results(
-            "/forms/{}/unshare".format(numeric_doc_id), request_type="PUT",
+            "/forms/{}/unshare".format(numeric_doc_id),
+            request_type="PUT",
         )
 
     # Folder / notebook methods

rspace_client/eln/filetree_importer.py

@@ -24,7 +24,9 @@ def __init__(self, eln_client):
 
     def _create_file_linking_doc(self, content, parent_folder_id, name, path2Id):
         rs_doc = self.cli.create_document(
-            name, parent_folder_id=parent_folder_id, fields=[{"content": content}],
+            name,
+            parent_folder_id=parent_folder_id,
+            fields=[{"content": content}],
         )
         path2Id[name] = rs_doc["globalId"]
 

rspace_client/inv/inv.py

@@ -867,8 +867,8 @@ def __init__(self, target_container: Union[str, int, dict, Container]):
 
 class ImageContainerTargetLocation(TargetLocation):
     """
-     An location in an ImageContainer is specified by the the container, and the 
-     ID of the location within the container.
+    An location in an ImageContainer is specified by the the container, and the
+    ID of the location within the container.
     """
 
     def __init__(
@@ -928,7 +928,7 @@ def __repr__(self):
 
 class ListContainerPost(ContainerPost):
     """
-      Define a new ListContainer to create
+    Define a new ListContainer to create
     """
 
     def __init__(
@@ -955,7 +955,7 @@ def __init__(
 
 class ImageContainerPost(ContainerPost):
     """
-      Define a new ImageContainer to create.
+    Define a new ImageContainer to create.
     """
 
     def __init__(
@@ -1011,7 +1011,7 @@ def __init__(
 
 class GridContainerPost(ContainerPost):
     """
-     Define a new grid container to create
+    Define a new grid container to create
     """
 
     def __init__(
@@ -1203,7 +1203,9 @@ def _do_simple_list(self, endpoint, pagination, sample_filter):
         if sample_filter is not None:
             pagination.data.update(sample_filter.data)
         return self.retrieve_api_results(
-            f"/{endpoint}", request_type="GET", params=pagination.data,
+            f"/{endpoint}",
+            request_type="GET",
+            params=pagination.data,
         )
 
     def stream_samples(
@@ -1408,7 +1410,8 @@ def duplicate(
         id_to_copy = Id(item_to_duplicate)
         endpoint = id_to_copy.get_api_endpoint()
         rc = self.retrieve_api_results(
-            f"/{endpoint}/{id_to_copy.as_id()}/actions/duplicate", request_type="POST",
+            f"/{endpoint}/{id_to_copy.as_id()}/actions/duplicate",
+            request_type="POST",
         )
         if new_name is not None:
             rc = self.rename(rc, new_name)
@@ -1449,7 +1452,9 @@ def add_note_to_subsample(
             raise ValueError("Supplied id is not a subsamples")
         data = {"content": note}
         return self.retrieve_api_results(
-            f"/subSamples/{ss_id.as_id()}/notes", request_type="POST", params=data,
+            f"/subSamples/{ss_id.as_id()}/notes",
+            request_type="POST",
+            params=data,
         )
 
     def get_workbenches(self) -> Sequence[dict]:
@@ -1598,7 +1603,7 @@ def set_as_top_level_container(
         self, container: Union[int, str, dict, Container]
     ) -> dict:
         """
-        Moves a container from its current location to be a top-level container    
+        Moves a container from its current location to be a top-level container
 
         Parameters
         ----------
@@ -1621,7 +1626,11 @@ def _id_as_container_id(self, target_container_id):
             raise ValueError("Target must be a container")
         return id_target
 
-    def add_items_to_list_container(self, target_container_id, *item_ids: str,) -> list:
+    def add_items_to_list_container(
+        self,
+        target_container_id,
+        *item_ids: str,
+    ) -> list:
         """
         Adds 1 or more items to a list container
 
@@ -2011,7 +2020,8 @@ def restore_sample_template(self, sample_template_id: Union[int, str]) -> dict:
         """
         id_to_restore = Id(sample_template_id)
         return self.retrieve_api_results(
-            f"/sampleTemplates/{id_to_restore.as_id()}/restore", request_type="PUT",
+            f"/sampleTemplates/{id_to_restore.as_id()}/restore",
+            request_type="PUT",
         )
 
     def transfer_sample_template_owner(

rspace_client/tests/template_builder_test.py

@@ -17,7 +17,10 @@
 class TemplateBuilderTest(unittest.TestCase):
     def test_invalid_unit(self):
         self.assertRaises(
-            ValueError, TemplateBuilder, "name", "unknownUnit",
+            ValueError,
+            TemplateBuilder,
+            "name",
+            "unknownUnit",
         )
 
     def test_add_radio(self):
@@ -66,7 +69,10 @@ def test_add_number_field_requires_number(self):
         builder = TemplateBuilder("myTemplate", "ml")
 
         self.assertRaises(
-            ValueError, builder.number, "pH", "XXX",
+            ValueError,
+            builder.number,
+            "pH",
+            "XXX",
         )
 
     def test_add_number_field_no_default(self):
@@ -77,7 +83,9 @@ def test_add_number_field_no_default(self):
     def test_name_required(self):
         builder = TemplateBuilder("myTemplate", "ml")
         self.assertRaises(
-            ValueError, builder.number, "",
+            ValueError,
+            builder.number,
+            "",
         )
 
     def test_add_date(self):
@@ -128,7 +136,10 @@ def test_add_uri(self):
         self.assertEqual(2, builder.field_count())
         self.assertEqual("https://www.google.com", builder._fields()[0]["content"])
         self.assertRaises(
-            ValueError, builder.uri, "name", "aa://www.goog[le.com:XXXX",
+            ValueError,
+            builder.uri,
+            "name",
+            "aa://www.goog[le.com:XXXX",
         )
 
     def test_build(self):