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Test on ubuntu 18/20 and use relative R versions (#828)
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@schloerke
schloerke committed Sep 7, 2021
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129 changes: 57 additions & 72 deletions .github/workflows/R-CMD-check.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow is overkill for most R packages and
# check-standard.yaml is likely a better choice.
on:
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
schedule:
- cron: '0 0 1,11,21 * *' # every 10 days (GHA cache invalidates after 7)

name: R-CMD-check

jobs:

rversions:
name: R Versions
runs-on: ubuntu-latest
outputs:
devel: ${{ steps.devel.outputs.installed-r-version }}
release: ${{ steps.release.outputs.installed-r-version }}
oldrel1: ${{ steps.oldrel1.outputs.installed-r-version }}
oldrel2: ${{ steps.oldrel2.outputs.installed-r-version }}
oldrel3: ${{ steps.oldrel3.outputs.installed-r-version }}
oldrel4: ${{ steps.oldrel4.outputs.installed-r-version }}
steps:
- { name: devel, uses: r-lib/actions/setup-r@master, id: devel, with: { r-version: devel, install-r: false }}
- { name: release, uses: r-lib/actions/setup-r@master, id: release, with: { r-version: release, install-r: false }}
- { name: oldrel/1, uses: r-lib/actions/setup-r@master, id: oldrel1, with: { r-version: oldrel/1, install-r: false }}
- { name: oldrel/2, uses: r-lib/actions/setup-r@master, id: oldrel2, with: { r-version: oldrel/2, install-r: false }}
- { name: oldrel/3, uses: r-lib/actions/setup-r@master, id: oldrel3, with: { r-version: oldrel/3, install-r: false }}
- { name: oldrel/4, uses: r-lib/actions/setup-r@master, id: oldrel4, with: { r-version: oldrel/4, install-r: false }}

R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

needs:
- rversions
strategy:
fail-fast: false
matrix:
config:
- {os: macOS-latest, r: 'devel'}
- {os: macOS-latest, r: 'release'}
- {os: macOS-latest, r: 'oldrel'}

- {os: windows-latest, r: 'devel'}
- {os: windows-latest, r: 'release'}
# - {os: windows-latest, r: 'oldrel'} # do not test due to binaries not being created

# check a lot of ubuntu combinations as that's where plumber is hosted
- {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-18.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-18.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-18.04, r: '3.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}

# would use RSPM for ubuntu 16, but sodium has issues finding libsodium
- {os: ubuntu-16.04, r: 'release'}
- {os: ubuntu-16.04, r: 'oldrel'}
- {os: ubuntu-16.04, r: '3.5'}
- {os: ubuntu-16.04, r: '3.4'}
- {os: macOS-latest, r: '${{ needs.rversions.outputs.release }}'}
- {os: windows-latest, r: '${{ needs.rversions.outputs.release }}'}
- {os: windows-latest, r: '3.6'}

- {os: ubuntu-20.04, r: '${{ needs.rversions.outputs.devel }}', http-user-agent: "release" }
- {os: ubuntu-20.04, r: '${{ needs.rversions.outputs.release }}'}
- {os: ubuntu-20.04, r: '${{ needs.rversions.outputs.oldrel1 }}'}
- {os: ubuntu-20.04, r: '${{ needs.rversions.outputs.oldrel2 }}'}
- {os: ubuntu-20.04, r: '${{ needs.rversions.outputs.oldrel3 }}'}
- {os: ubuntu-20.04, r: '${{ needs.rversions.outputs.oldrel4 }}'}

# Deliberately check on older ubuntu to maximise backward compatibility
- {os: ubuntu-18.04, r: '${{ needs.rversions.outputs.devel }}', http-user-agent: "release" }
- {os: ubuntu-18.04, r: '${{ needs.rversions.outputs.release }}'}
- {os: ubuntu-18.04, r: '${{ needs.rversions.outputs.oldrel1 }}'}
- {os: ubuntu-18.04, r: '${{ needs.rversions.outputs.oldrel2 }}'}
- {os: ubuntu-18.04, r: '${{ needs.rversions.outputs.oldrel3 }}'}
- {os: ubuntu-18.04, r: '${{ needs.rversions.outputs.oldrel4 }}'}

env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
_R_CHECK_FORCE_SUGGESTS_: false
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
Expand All @@ -54,30 +78,19 @@ jobs:
with:
node-version: '12.x'

- uses: r-lib/actions/setup-r@master
- uses: r-lib/actions/setup-r@v1
id: install-r
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-pandoc@master
- uses: r-lib/actions/setup-pandoc@v1

- name: Install pak and query dependencies
shell: Rscript {0}
run: |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
saveRDS(pak::pkg_deps_tree("local::.", dependencies = TRUE), ".github/r-depends.rds")
- name: Cache R packages
uses: actions/cache@v2
- uses: r-lib/actions/setup-r-dependencies@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-2-${{ hashFiles('.github/r-depends.rds') }}
restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-2-

- name: Install system dependencies
if: runner.os == 'Linux'
shell: Rscript {0}
run: |
pak::local_system_requirements(execute = TRUE)
extra-packages: rcmdcheck
cache-version: 1

# Install Cairo system dependencies
# used for svg testing
Expand All @@ -87,40 +100,12 @@ jobs:
brew install --cask xquartz
brew install cairo
- name: macOS oldrel Rcpp
if: runner.os == 'macOS' && matrix.config.r == 'oldrel'
shell: Rscript {0}
run: |
install.packages("Rcpp", type = "source")
- name: Ubuntu 16 xml2
if: matrix.config.os == 'ubuntu-16.04'
shell: Rscript {0}
run: |
pak::pkg_system_requirements("withr", execute = TRUE)
pak::pkg_install("withr")
pak::pkg_system_requirements("xml2", execute = TRUE)
# https://github.com/r-lib/xml2/issues/294
# always install for now
withr::with_makevars(c(CXX = "g++ -std=c++11"), install.packages("xml2", verbose = TRUE))
- name: Install dependencies
shell: Rscript {0}
run: |
pak::local_install_dev_deps(upgrade = TRUE)
pak::pkg_install("rcmdcheck")
pak::pkg_install("sessioninfo")
- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}

- name: Check
env:
_R_CHECK_CRAN_INCOMING_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
run: |
options(crayon.enabled = TRUE)
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}

- name: Show testthat output
Expand All @@ -130,7 +115,7 @@ jobs:

- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
uses: actions/upload-artifact@main
with:
name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
path: check

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