renv::install/update() error "Retrieving 'https://cloud.r-project.org/src/contrib/NA'"

[adamaltmejd]

> renv::update("Rcpp")
* Checking for updated packages ... Done!
The following package(s) will be updated:

# CRAN ===============================
- Rcpp   [1.0.8.3 -> 1.0.9]

Do you want to proceed? [y/N]: y
Retrieving 'https://cloud.r-project.org/src/contrib/NA' ...
Error: failed to retrieve 'https://cloud.r-project.org/src/contrib/NA' [error code 22]
In addition: Warning message:
curl: (22) The requested URL returned error: 404 
Traceback (most recent calls last):
9: renv::update("Rcpp")
8: install(packages = updates, library = libpaths, rebuild = rebuild, 
       project = project)
7: retrieve(names(remotes))
6: handler(package, renv_retrieve_impl(package))
5: renv_retrieve_impl(package)
4: renv_retrieve_repos(record)
3: renv_retrieve_repos_impl(record)
2: renv_retrieve_package(record, url, path)
1: stop(status)

> renv::install("Rcpp")
Retrieving 'https://cloud.r-project.org/src/contrib/NA' ...
Error: failed to retrieve 'https://cloud.r-project.org/src/contrib/NA' [error code 22]
In addition: Warning message:
curl: (22) The requested URL returned error: 404 
Traceback (most recent calls last):
8: renv::install("Rcpp")
7: retrieve(names(remotes))
6: handler(package, renv_retrieve_impl(package))
5: renv_retrieve_impl(package)
4: renv_retrieve_repos(record)
3: renv_retrieve_repos_impl(record)
2: renv_retrieve_package(record, url, path)
1: stop(status)

install.packages("Rcpp") works as normal. Same error for lots of other packages, eg. stringi.

> sessionInfo()
R version 4.2.1 (2022-06-23)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.4

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

loaded via a namespace (and not attached):
[1] compiler_4.2.1 cli_3.3.0      parallel_4.2.1 tools_4.2.1    jsonlite_1.8.0 renv_0.15.5-39 rlang_1.0.2   

[kevinushey]

Seems to be working for me:

> options(repos = c(CRAN = "https://cloud.r-project.org"))
> renv::install("Rcpp", rebuild = TRUE)
Retrieving 'https://cloud.r-project.org/bin/macosx/contrib/4.2/Rcpp_1.0.9.tgz' ...
        OK [file is up to date]
Installing Rcpp [1.0.9] ...
        OK [installed binary]
Copying Rcpp [1.0.9] into the cache ...
        OK [copied to cache in 0.33 seconds]
> sessionInfo()
R version 4.2.1 (2022-06-23)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur ... 10.16

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_4.2.1 tools_4.2.1    renv_0.15.5-38

Can you provide any other details?

[adamaltmejd]

Ok think i figured it out: seems to be a bug with having multiple repos set in option(repos).

❯ R
> getOption("repos")
                                     CRAN                                        DT
            "https://cloud.r-project.org" "https://Rdatatable.gitlab.io/data.table"
> renv::install("Rcpp")
Retrieving 'https://cloud.r-project.org/src/contrib/NA' ...
Error: failed to retrieve 'https://cloud.r-project.org/src/contrib/NA' [error code 22]
In addition: Warning messages:
1: could not retrieve available packages for url 'https://Rdatatable.gitlab.io/data.table/bin/macosx/big-sur-arm64/contrib/4.2'
2: curl: (22) The requested URL returned error: 404
3: curl: (22) The requested URL returned error: 404
Traceback (most recent calls last):
8: renv::install("Rcpp")
7: retrieve(names(remotes))
6: handler(package, renv_retrieve_impl(package))
5: renv_retrieve_impl(package)
4: renv_retrieve_repos(record)
3: renv_retrieve_repos_impl(record)
2: renv_retrieve_package(record, url, path)
1: stop(status)
> getOption("repos")
                                     CRAN                                        DT
            "https://cloud.r-project.org" "https://Rdatatable.gitlab.io/data.table"
> options(repos = c(CRAN = "https://cloud.r-project.org"))
> getOption("repos")
                         CRAN
"https://cloud.r-project.org"
> renv::install("Rcpp")
Retrieving 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.9.tar.gz' ...
	OK [file is up to date]
Installing Rcpp [1.0.9] ...

[kevinushey]

Thanks, I can reproduce now:

> options(repos = c(
+   CRAN = "https://cran.rstudio.com",
+   DT = "https://Rdatatable.gitlab.io/data.table"
+ ))
> renv::install("Rcpp")
Warning: could not retrieve available packages for url 'https://Rdatatable.gitlab.io/data.table/bin/macosx/big-sur-arm64/contrib/4.2'
Retrieving 'https://cran.rstudio.com/src/contrib/NA' ...
Warning: curl: (22) The requested URL returned error: 404
Error: failed to retrieve 'https://cran.rstudio.com/src/contrib/NA' [error code 22]
Traceback (most recent calls last):
8: renv::install("Rcpp")
7: records <- retrieve(names(remotes)) at install.R#207
6: for (package in packages)
     handler(package, renv_retrieve_impl(package)) at retrieve.R#33
5: handler = handler %||% function(package, action) action, at restore.R#267
4: switch(source,
          bioconductor = renv_retrieve_bioconductor(record),
          bitbucket    = renv_retrieve_bitbucket(record),
          git          = renv_retrieve_git(record),
          github       = renv_retrieve_github(record),
          gitlab       = renv_retrieve_gitlab(record),
          repository   = renv_retrieve_repos(record),
          url          = renv_retrieve_url(record),
          renv_retrieve_unknown_source(record)
   ) at retrieve.R#184
3: if (all(c("type", "url") %in% names(attributes(record))))
     return(renv_retrieve_repos_impl(record)) at retrieve.R#527
2: renv_retrieve_package(record, url, path) at retrieve.R#821
1: if (inherits(status, "error"))
     stop(status) at retrieve.R#849

I'll take a look.

[kevinushey]

Should be fixed up in the development version; thanks for reporting!

[adamaltmejd]

Thanks for an excellent package!