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Error: Unhandled Exception: child_task=1391364942 child_task_status=failed: Error building image: Error building MA #1048

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bclopesrs opened this issue Mar 5, 2024 · 4 comments
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Error: Unhandled Exception: child_task=1391364942 child_task_status=failed: Error building image: Error building MA #1048

bclopesrs opened this issue Mar 5, 2024 · 4 comments

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@bclopesrs
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I have been run in this issue when trying to deploy my ShinyApp. Does anybody know how to solve it? Error: Unhandled Exception: child_task=1391364942 child_task_status=failed: Error building image: Error building MA
@gorkang
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gorkang commented Mar 6, 2024

Same here. Depending on the specific dependencies, the error is related to MASS or DBI.

Tried to install the dev version of rsconnect with remotes::install_github("rstudio/rsconnect") but I still get the same errors.

This is with R version 4.3.3 (2024-02-29) on Ubuntu 22.04.

rsconnect::deployApp(appDir = "~/BayesianReasoning/", appFiles = c("app.R", "DESCRIPTION"), appName = "BayesianReasoning_test")
#> ── Preparing for deployment ────────────────────────────────────────────────────
#> ✔ Re-deploying "BayesianReasoning_test" using "server: shinyapps.io / username: gorkang"
#> ℹ Looking up application with id "11408541"...
#> ✔ Found application <https://gorkang.shinyapps.io/BayesianReasoning_test/>
#> ℹ Bundling 2 files: 'app.R' and 'DESCRIPTION'
#> ℹ Capturing R dependencies with renv
#> ✔ Found 91 dependencies
#> ✔ Created 56,648b bundle
#> ℹ Uploading bundle...
#> ✔ Uploaded bundle with id 8338522
#> ── Deploying to server ─────────────────────────────────────────────────────────
#> Waiting for task: 1391508975
#>   building: Parsing manifest
#>   building: Building image: 10091866
#>   building: Installing system dependencies
#>   error: Building package: MASS
#> ## Begin Task Log ##############################################################
#> ## End Task Log ################################################################
#> Error: Unhandled Exception: child_task=1391508978 child_task_status=failed: Error building image: Error building MASS (7.3-60.0.1). Build exited with non-zero status: 127

Created on 2024-03-06 with reprex v2.1.0

Session info 
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value
#>  version  R version 4.3.3 (2024-02-29)
#>  os       Ubuntu 22.04.4 LTS
#>  system   x86_64, linux-gnu
#>  ui       X11
#>  language (EN)
#>  collate  en_US.UTF-8
#>  ctype    en_US.UTF-8
#>  tz       Atlantic/Canary
#>  date     2024-03-06
#>  pandoc   3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package     * version    date (UTC) lib source
#>  askpass       1.2.0      2023-09-03 [1] RSPM (R 4.3.0)
#>  cli           3.6.2      2023-12-11 [1] RSPM (R 4.3.0)
#>  curl          5.2.1      2024-03-01 [1] CRAN (R 4.3.3)
#>  digest        0.6.34     2024-01-11 [1] RSPM (R 4.3.0)
#>  evaluate      0.23       2023-11-01 [1] RSPM (R 4.3.0)
#>  fastmap       1.1.1      2023-02-24 [1] RSPM
#>  fs            1.6.3      2023-07-20 [1] RSPM (R 4.3.0)
#>  glue          1.7.0      2024-01-09 [1] RSPM (R 4.3.0)
#>  htmltools     0.5.7      2023-11-03 [1] RSPM (R 4.3.0)
#>  jsonlite      1.8.8      2023-12-04 [1] RSPM (R 4.3.0)
#>  knitr         1.45       2023-10-30 [1] RSPM (R 4.3.0)
#>  lifecycle     1.0.4      2023-11-07 [1] RSPM (R 4.3.0)
#>  magrittr      2.0.3      2022-03-30 [1] RSPM
#>  openssl       2.1.1      2023-09-25 [1] RSPM (R 4.3.1)
#>  purrr         1.0.2      2023-08-10 [1] RSPM (R 4.3.0)
#>  R.cache       0.16.0     2022-07-21 [1] RSPM
#>  R.methodsS3   1.8.2      2022-06-13 [1] RSPM
#>  R.oo          1.26.0     2024-01-24 [1] RSPM (R 4.3.0)
#>  R.utils       2.12.3     2023-11-18 [1] RSPM (R 4.3.0)
#>  renv          1.0.5      2024-02-29 [1] CRAN (R 4.3.3)
#>  reprex        2.1.0      2024-01-11 [1] RSPM (R 4.3.0)
#>  rlang         1.1.3      2024-01-10 [1] RSPM (R 4.3.0)
#>  rmarkdown     2.25       2023-09-18 [1] CRAN (R 4.3.2)
#>  rsconnect     1.2.1.9000 2024-03-06 [1] Github (rstudio/rsconnect@81b18c9)
#>  rstudioapi    0.15.0     2023-07-07 [1] CRAN (R 4.3.1)
#>  sessioninfo   1.2.2      2021-12-06 [1] RSPM
#>  styler        1.10.2     2023-08-29 [1] RSPM (R 4.3.0)
#>  vctrs         0.6.5      2023-12-01 [1] RSPM (R 4.3.0)
#>  withr         3.0.0      2024-01-16 [1] RSPM (R 4.3.0)
#>  xfun          0.42       2024-02-08 [1] RSPM (R 4.3.0)
#>  yaml          2.3.8      2023-12-11 [1] RSPM (R 4.3.0)
#> 
#>  [1] /home/emrys/R/x86_64-pc-linux-gnu-library/4.3
#>  [2] /usr/local/lib/R/site-library
#>  [3] /usr/lib/R/site-library
#>  [4] /usr/lib/R/library
#> 
#> ──────────────────────────────────────────────────────────────────────────────

@gacatag
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gacatag commented Mar 6, 2024

Hello.
Sorry I also had a similar problem. My codes are dependent on "GenomicRanges" and "shiny" libraries. When attempting to deploy app (with a goal to update changes to an already available app) I get an error saying "Error building BiocGenerics (0.48.1)".

library(BiocManager)
library(rsconnect)
options(
  repos = c(CRAN_mirror = "https://cran.rstudio.com/"),
  BioC_mirror = "https://bioconductor.statistik.tu-dortmund.de/"
)
options(repos = BiocManager::repositories())
deployApp("/Users/oghabian/Documents/projects/UddLab/OBSCN_NEW/shinyApp/", appName = "OBSCN_PSIVIS")

── Preparing for deployment ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ Re-deploying "OBSCN_PSIVIS" using "server: shinyapps.io / username: gacatag"
ℹ Looking up application with id "9532727"...
✔ Found application <https://gacatag.shinyapps.io/OBSCN_PSIVIS/>
ℹ Bundling 14 files: app.R, data/.Rapp.history, data/difAdultSel.rda, data/difListSel.rda, data/difMuscleSel.rda, data/dupInd.rda, data/firstExInd.rda, data/groupSam.rda, data/lastExInd.rda, data/obsInd.rda, data/psidat.rda, data/psimean.rda, data/uniqExGr.rda, and www/IntEREst_medium.jpg
ℹ Capturing R dependencies with renv
✔ Found 43 dependencies
✔ Created 131,011b bundle
ℹ Uploading bundle...
✔ Uploaded bundle with id 8333868
── Deploying to server ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Waiting for task: 1391155842
  building: Processing bundle: 8333868
  building: Building image: 10084880
  building: Building package: BiocGenerics
## Begin Task Log ############################################################################################################################################
## End Task Log ##############################################################################################################################################
Error: Unhandled Exception: child_task=1391155843 child_task_status=failed: Error building image: Error building BiocGenerics (0.48.1). Build exited with non-zero status: 127
In addition: Warning message:
invalid uid value replaced by that for user 'nobody'

Here are the repository info:
BiocManager::repositories()

'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    BioCsoft: https://bioconductor.statistik.tu-dortmund.de//packages/3.18/bioc
    BioCann: https://bioconductor.statistik.tu-dortmund.de//packages/3.18/data/annotation
    BioCexp: https://bioconductor.statistik.tu-dortmund.de//packages/3.18/data/experiment
    BioCworkflows: https://bioconductor.statistik.tu-dortmund.de//packages/3.18/workflows
    BioCbooks: https://bioconductor.statistik.tu-dortmund.de//packages/3.18/books
                                                                      BioCsoft                                                                        BioCann 
           "https://bioconductor.statistik.tu-dortmund.de//packages/3.18/bioc" "https://bioconductor.statistik.tu-dortmund.de//packages/3.18/data/annotation" 
                                                                       BioCexp                                                                  BioCworkflows 
"https://bioconductor.statistik.tu-dortmund.de//packages/3.18/data/experiment"       "https://bioconductor.statistik.tu-dortmund.de//packages/3.18/workflows" 
                                                                     BioCbooks                                                                    CRAN_mirror 
          "https://bioconductor.statistik.tu-dortmund.de//packages/3.18/books"

Could you kindly look the issue and resolve or instruct on how to overcome the issue ?

Cheers,

Ali

@ssinnott
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ssinnott commented Mar 6, 2024

Hello!

The error message above is not very helpful but the underlying issue I believe is that we don't presently support R version 4.3.3 on shinyapps.io. We are in the process of adding it.

In terms of getting support for issues related to shinyapps.io if you have a paid subscription you can open a support request. Otherwise asking over on community is generally a better place:

https://community.rstudio.com/c/shiny/shinyappsio/24

Thanks!

Sean

@ssinnott ssinnott closed this as completed Mar 6, 2024
@gorkang
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gorkang commented Mar 7, 2024

Thanks for the help @ssinnott

Just in case it's useful for someone, at least on Ubuntu, I could downgrade R and deploy the app with:

sudo apt purge r-base r-recommended r-base-core
sudo apt install r-base=4.3.2-1.2204.0 r-recommended=4.3.2-1.2204.0 r-base-core=4.3.2-1.2204.0

@aronatkins aronatkins mentioned this issue Mar 8, 2024
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@ssinnott @gorkang @gacatag @bclopesrs