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Will wtpoa-cns automatically exit after the run is complete? #50
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Abnormal. What's about the log information? Could you copy the text here. |
$ /public/home/yangjs/software/wtdbg2/wtpoa-cns -t 16 -i BAC_nanopore.ctg.lay.gz -fo BAC_nanopore.final.fa-- total memory 32727680.0 kB
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Thanks Jianshun! Please try new commit 31cf61b Best, |
Thank you very much |
Hi, Jumping on this closed issue here because I think that I'm seeing the same behavior.
I'm working off of the most recent commit
My command was:
For reference, my
Here is the tail of the
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Dear zrlewis, I cannot locate the bug from reading the code, for I haven't find a test data reproduce this problem. If anyone find a small test data, I will continue to work on it. Best, |
@ruanjue Thanks for looking into it. I'm trying a couple new assemblies from scratch using the most recent commit and will let you know if I still encounter the problem. |
@ruanjue |
I believe there is still similar problem in wtpoa-cns, but have no idea where to find it. Let's talk about it when it re-occuring. Jue |
Hi, |
It looked like some contig took very long time or endless. Try to split the input fle into multiple ones, and run wtpoa-cns seperately. |
Thanks. You are right, there is one contig look endless. |
If the contig file is small, please send it to me ruanjue.big(AT)qq.com. |
I run the command “./wtpoa-cns -t 16 -i prefix.ctg.lay -fo prefix.ctg.lay.fa”, but after generating the prefix.ctg.lay.fa file for a long time, wtpoa-cns does not Automatic termination, is this normal?
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