Use realpath in clean_load_path #6502

ojab · 2018-04-23T12:48:50Z

see #6465, basically we're not rejecting bundler_lib because we have symlink there and real path in $LOAD_PATH

$ irb
2.5.1 :001 > require 'bundler/setup'
# what happens next will shock you
From: /real_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib/bundler/shared_helpers.rb @ line 339 Bundler::SharedHelpers#clean_load_path:

    330: def clean_load_path
    331:   # handle 1.9 where system gems are always on the load path
    332:   return unless defined?(::Gem)
    333:
    334:   bundler_lib = bundler_ruby_lib
    335:
    336:   loaded_gem_paths = Bundler.rubygems.loaded_gem_paths
    337:
    338:   binding.pry
 => 339:   $LOAD_PATH.reject! do |p|
    340:     path = File.expand_path(p)
    341:     path = File.realpath(path) if File.exist?(path)
    342:     next if path.start_with?(bundler_lib)
    343:     loaded_gem_paths.delete(p)
    344:   end
    345:   $LOAD_PATH.uniq!
    346: end

[1] pry(#<Bundler::Runtime>)> bundler_lib
=> "/real_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib"
[2] pry(#<Bundler::Runtime>)> loaded_gem_paths
=> ["/symlinked_path/.rvm/gems/ruby-2.5.1@global/gems/did_you_mean-1.2.0/lib",
 "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib",
 "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/byebug-10.0.2/lib",
 "/symlinked_path/.rvm/gems/ruby-2.5.1/extensions/x86_64-linux/2.5.0/byebug-10.0.2",
 "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/coderay-1.1.2/lib",
 "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/method_source-0.9.0/lib",
 "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/pry-0.11.3/lib",
 "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/pry-byebug-3.6.0/lib",
 "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/gems/fileutils-1.0.2/lib",
 "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/gems/psych-3.0.2/lib",
 "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/psych-3.0.2"]

ghost · 2018-04-23T12:48:52Z

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colby-swandale · 2018-04-23T13:17:08Z

This will need a test

alexdean · 2018-04-26T21:46:27Z

@ojab i took a pass at writing some tests for this, but i'm not sure i'm on the right track. (not clear on what should be in $LOAD_PATH when this method finishes.)

ojab · 2018-04-27T14:03:44Z

Sorry for delay.

rebased to master
added spec that fails on ruby-2.5.1 + bundler master and passes on ruby-2.5.1 and bundler from my branch

So the question is: what exactly we should test? Right now I'm setting up symlinked RUBY_HOME w/ bundler and requiring 'bundler/setup' (and it looks quite ugly tbh, suggestions are welcome).

Do we need to test that clean_load_path actually removes bundler_lib from $LOAD_PATH?
What should we do with Bundler.rubygems.loaded_gem_paths? In my test setup $LOAD_PATH contains both symlinked and real path for some gems, while Bundler.rubygems.loaded_gem_paths contains real paths only for system gems (I don't know if "system" is proper term here), such as fiddle/fileutils/json/etc, all other have symlinked paths. So should we convert it all to the real paths during clean_load_path or we're already ok here? Everything works as is AFAICS, but I don't know if we have can of worms here.
Should I add some missing directories to $LOAD_PATH that I'm testing? If so — is it ok to add it to the same it block or better add another one (I don't know preferred style in bundler)?
Right now travis testing 2.5.0, should I bump it to 2.5.1 (and the same for 2.3/2.4 rubies)? If so — do we need to retain 2.5.0, considering behaviour change and unknown reason for that change? (we know when this failure is happening, but don't know why and when it actually started happening)

ojab · 2018-04-27T14:13:40Z

Do we need to check that p.start_with?(bundler_lib) or this case is impossible?

segiddins

Seems reasonable, with the config changes reverted

segiddins · 2018-05-01T05:09:58Z

lib/bundler/shared_helpers.rb

@@ -336,7 +336,9 @@ def clean_load_path
      loaded_gem_paths = Bundler.rubygems.loaded_gem_paths

      $LOAD_PATH.reject! do |p|
-        next if File.expand_path(p).start_with?(bundler_lib)
+        path = File.expand_path(p)
+        path = File.realpath(path) if File.exist?(path)


this needs to also check if File.respond_to?(:realpath)

segiddins · 2018-05-01T05:11:58Z

spec/runtime/setup_spec.rb

+
+      ENV["GEM_PATH"] = symlinked_gem_home.to_path
+      ruby <<-R
+        $LOAD_PATH.delete_at(0)


please update this to delete a particular path, with a comment why it's being deleted

segiddins · 2018-05-01T05:12:36Z

spec/runtime/setup_spec.rb

+      ENV["GEM_PATH"] = symlinked_gem_home.to_path
+      ruby <<-R
+        $LOAD_PATH.delete_at(0)
+        puts (require 'bundler/setup')


imho we should add something like raise "missing bundler lib path in #{$LOAD_PATH}" unless $LOAD_PATH.find ...

segiddins · 2018-05-01T05:13:34Z

lib/bundler/shared_helpers.rb

-        next if File.expand_path(p).start_with?(bundler_lib)
+        path = File.expand_path(p)
+        path = File.realpath(path) if File.exist?(path)
+        next if path.start_with?(bundler_lib)


next if path.start_with?(bundler_lib) || p.start_with?(bundler_lib) ?

|| File.expand_path(p).start_with?(bundler_lib)?

eregon · 2018-07-09T20:18:59Z

@indirect Could you share your opinion on which way to go seems best?
This issue affects every RVM user for JRuby & TruffleRuby, as well as anyone having Bundler installing in a Gem directory referenced as a symlink in GEM_PATH.

indirect · 2018-07-10T06:23:26Z

@eregon after really digging in to why this test was failing on Travis with RVM, it turns out that RVM was "installing" bundler by simply dropping a copy of Bundler into site_ruby. No gemspec, no gem installation, just putting "bundler.rb" into a default LOAD_PATH. It had literally never occurred to me that anyone might do that, and so our tests were totally unprepared for that situation. 😬

My additional commits to this PR add some defensive deleting, removing Bundler if the bare files have been copied into site_ruby. The tests now pass, and this fix is now ready to go for the next release of Bundler.

Thanks everyone for all of your help!

indirect · 2018-07-10T06:23:32Z

@bundlerbot r+

bundlerbot · 2018-07-10T06:23:33Z

📌 Commit 865ec52 has been approved by indirect

bundlerbot · 2018-07-10T06:23:45Z

⌛ Testing commit 865ec52 with merge 9ca3afe...

Use realpath in clean_load_path see #6465, basically we're not rejecting `bundler_lib` because we have symlink there and real path in `$LOAD_PATH` ``` $ irb 2.5.1 :001 > require 'bundler/setup' # what happens next will shock you From: /real_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib/bundler/shared_helpers.rb @ line 339 Bundler::SharedHelpers#clean_load_path: 330: def clean_load_path 331: # handle 1.9 where system gems are always on the load path 332: return unless defined?(::Gem) 333: 334: bundler_lib = bundler_ruby_lib 335: 336: loaded_gem_paths = Bundler.rubygems.loaded_gem_paths 337: 338: binding.pry => 339: $LOAD_PATH.reject! do |p| 340: path = File.expand_path(p) 341: path = File.realpath(path) if File.exist?(path) 342: next if path.start_with?(bundler_lib) 343: loaded_gem_paths.delete(p) 344: end 345: $LOAD_PATH.uniq! 346: end [1] pry(#<Bundler::Runtime>)> bundler_lib => "/real_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib" [2] pry(#<Bundler::Runtime>)> loaded_gem_paths => ["/symlinked_path/.rvm/gems/ruby-2.5.1@global/gems/did_you_mean-1.2.0/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/byebug-10.0.2/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/extensions/x86_64-linux/2.5.0/byebug-10.0.2", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/coderay-1.1.2/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/method_source-0.9.0/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/pry-0.11.3/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/pry-byebug-3.6.0/lib", "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/gems/fileutils-1.0.2/lib", "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/gems/psych-3.0.2/lib", "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/psych-3.0.2"] ```

bundlerbot · 2018-07-10T06:51:13Z

☀️ Test successful - status-travis
Approved by: indirect
Pushing 9ca3afe to master...

Use realpath in clean_load_path see #6465, basically we're not rejecting `bundler_lib` because we have symlink there and real path in `$LOAD_PATH` ``` $ irb 2.5.1 :001 > require 'bundler/setup' # what happens next will shock you From: /real_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib/bundler/shared_helpers.rb @ line 339 Bundler::SharedHelpers#clean_load_path: 330: def clean_load_path 331: # handle 1.9 where system gems are always on the load path 332: return unless defined?(::Gem) 333: 334: bundler_lib = bundler_ruby_lib 335: 336: loaded_gem_paths = Bundler.rubygems.loaded_gem_paths 337: 338: binding.pry => 339: $LOAD_PATH.reject! do |p| 340: path = File.expand_path(p) 341: path = File.realpath(path) if File.exist?(path) 342: next if path.start_with?(bundler_lib) 343: loaded_gem_paths.delete(p) 344: end 345: $LOAD_PATH.uniq! 346: end [1] pry(#<Bundler::Runtime>)> bundler_lib => "/real_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib" [2] pry(#<Bundler::Runtime>)> loaded_gem_paths => ["/symlinked_path/.rvm/gems/ruby-2.5.1@global/gems/did_you_mean-1.2.0/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/bundler-1.16.2/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/byebug-10.0.2/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/extensions/x86_64-linux/2.5.0/byebug-10.0.2", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/coderay-1.1.2/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/method_source-0.9.0/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/pry-0.11.3/lib", "/symlinked_path/.rvm/gems/ruby-2.5.1/gems/pry-byebug-3.6.0/lib", "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/gems/fileutils-1.0.2/lib", "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/gems/psych-3.0.2/lib", "/real_path/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/psych-3.0.2"] ``` (cherry picked from commit 9ca3afe)

eregon · 2018-07-10T20:15:50Z

@indirect Thank you. I agree removing that copy on site_ruby should make everything saner for testing.

I think this copy of bundler in site_ruby is created by running gem update --system with MRI 2.5.1.
At least I can confirm gem update --system adds lib/ruby/site_ruby/2.5.0/bundler when I run it locally.
TravisCI's MRI 2.5.1 (https://rubies.travis-ci.org/ubuntu/14.04/x86_64/ruby-2.5.1.tar.bz2) already contains the site_ruby bundler.
I'd guess this might be due to travis-ci/travis-rubies@e62622d or RVM updating RubyGems on rvm install ruby-2.5.1.

In TravisCI's MRI 2.5.1, there is a gemspec in the default gems dir (same for my local copy of MRI 2.5.1): lib/ruby/gems/2.5.0/specifications/default/bundler-1.16.2.gemspec

eregon · 2018-07-10T20:19:07Z

lib/bundler/shared_helpers.rb

+      return expanded unless File.respond_to?(:realpath)
+
+      while File.exist?(expanded) && File.realpath(expanded) != expanded
+        expanded = File.realpath(expanded)


AFAIK File.realpath() resolves all symlinks it can, so a single call should be enough, unlike readlink(1).

Thanks @ojab for making a PR to fix this :)

…ndale Expand symlinks in gem path # Description: The environment variable `GEM_PATH` can contain symlinks. This is notably the case on RVM, with a typical `GEM_PATH` being `GEM_PATH=/home/eregon/.rvm/gems/ruby-2.5.1:/home/eregon/.rvm/gems/ruby-2.5.1@global` (the `...@global` is a symlink to `/home/eregon/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0`). Currently, RubyGems just takes the paths from `GEM_HOME` and `GEM_PATH` and store them in `Gem.dir` and `Gem.path`, without resolving symlinks. Similarly those paths might end up in `$LOAD_PATH` and still contain symlinks. This makes all code relying on `__FILE__`, `caller`, `$LOADED_FEATURES` or `$LOAD_PATH`, etc more brittle for paths comparisons, by having to expand paths with e.g. `File.realpath` before any path comparison involving those paths. As an example, Bundler has a recent bug due to this, where it fails to detect its own `bundler-1.16.2/lib` directory in `$LOAD_PATH` due to the presence of symlinks in GEM_PATH: rubygems/bundler#6502 rubygems/bundler#6465 While this specific case of course should be fixed in Bundler, it's not hard to imagine many other places might have similar assumptions. So I think it's just more robust for all gems to have RubyGems expands symlinks from the environment `GEM_HOME` and `GEM_PATH`. Ruby implementations since Ruby 2.4.4 [resolve symlinks from `$LOAD_PATH`](oracle/truffleruby@9a76df4#diff-7346c44420f7a2c1d276e7f67dcee8f8R369). Therefore, having symlinks in `$LOAD_PATH` means an extra cost during `require` to expand each `$LOAD_PATH` with symlinks. So it's more efficient if there are already realpaths in `$LOAD_PATH`, and less surprising for everybody (e.g., paths in `$LOADED_FEATURES` are actual concatenation of one of the `$LOAD_PATH` + `/` + required feature). ______________ # Tasks: - [x] Describe the problem / feature - [x] Write tests - [x] Write code to solve the problem - [x] Get code review from coworkers / friends I will abide by the [code of conduct](https://github.com/rubygems/rubygems/blob/master/CODE_OF_CONDUCT.md).

@indirect

6694: Fix local spec failure r=indirect a=deivid-rodriguez ### What was the end-user problem that led to this PR? The problem was that bundler specs won't pass on my system. One of the two failures I was getting is the spec added by #6502. ### What was your diagnosis of the problem? My diagnosis was that my system has a similar setup as TravisCI (Linux with a ruby version manager on top), but I don't set the `TRAVIS` environment variable to run the tests. This means some trickery used in the specs to get them green on TravisCI is not applied to my local run, so specs failed. ### What is your fix for the problem, implemented in this PR? My fix is to make this spec green independently from whether it's run on TravisCI or not. My changes also make this spec not delete any files from the rubygems installation where the specs are running. In #6502 (comment) @indirect said that the files being deleted here are put in there by `RVM`. However, I don't think that's accurate, it's `gem update --system` putting these files in there. So if these files should not be there, we should not put them there in the first place instead of deleting them during bundler's specs. ### Why did you choose this fix out of the possible options? I chose this fix because the alternative would be to set the `TRAVIS` environment variable before running the specs locally, but that would mean that `bundler`'s specs would delete files from my global `rubygems` installation, which seems... no good. Co-authored-by: David Rodríguez <deivid.rodriguez@riseup.net>

@indirect

6694: Fix local spec failure r=deivid-rodriguez a=deivid-rodriguez ### What was the end-user problem that led to this PR? The problem was that bundler specs won't pass on my system. One of the two failures I was getting is the spec added by #6502. ### What was your diagnosis of the problem? My diagnosis was that my system has a similar setup as TravisCI (Linux with a ruby version manager on top), but I don't set the `TRAVIS` environment variable to run the tests. This means some trickery used in the specs to get them green on TravisCI is not applied to my local run, so specs failed. ### What is your fix for the problem, implemented in this PR? My fix is to make this spec green independently from whether it's run on TravisCI or not. My changes also make this spec not delete any files from the rubygems installation where the specs are running. In #6502 (comment) @indirect said that the files being deleted here are put in there by `RVM`. However, I don't think that's accurate, it's `gem update --system` putting these files in there. So if these files should not be there, we should not put them there in the first place instead of deleting them during bundler's specs. ### Why did you choose this fix out of the possible options? I chose this fix because the alternative would be to set the `TRAVIS` environment variable before running the specs locally, but that would mean that `bundler`'s specs would delete files from my global `rubygems` installation, which seems... no good. Co-authored-by: David Rodríguez <deivid.rodriguez@riseup.net>

…ndale Expand symlinks in gem path # Description: The environment variable `GEM_PATH` can contain symlinks. This is notably the case on RVM, with a typical `GEM_PATH` being `GEM_PATH=/home/eregon/.rvm/gems/ruby-2.5.1:/home/eregon/.rvm/gems/ruby-2.5.1@global` (the `...@global` is a symlink to `/home/eregon/.rvm/rubies/ruby-2.5.1/lib/ruby/gems/2.5.0`). Currently, RubyGems just takes the paths from `GEM_HOME` and `GEM_PATH` and store them in `Gem.dir` and `Gem.path`, without resolving symlinks. Similarly those paths might end up in `$LOAD_PATH` and still contain symlinks. This makes all code relying on `__FILE__`, `caller`, `$LOADED_FEATURES` or `$LOAD_PATH`, etc more brittle for paths comparisons, by having to expand paths with e.g. `File.realpath` before any path comparison involving those paths. As an example, Bundler has a recent bug due to this, where it fails to detect its own `bundler-1.16.2/lib` directory in `$LOAD_PATH` due to the presence of symlinks in GEM_PATH: rubygems/bundler#6502 rubygems/bundler#6465 While this specific case of course should be fixed in Bundler, it's not hard to imagine many other places might have similar assumptions. So I think it's just more robust for all gems to have RubyGems expands symlinks from the environment `GEM_HOME` and `GEM_PATH`. Ruby implementations since Ruby 2.4.4 [resolve symlinks from `$LOAD_PATH`](oracle/truffleruby@9a76df4#diff-7346c44420f7a2c1d276e7f67dcee8f8R369). Therefore, having symlinks in `$LOAD_PATH` means an extra cost during `require` to expand each `$LOAD_PATH` with symlinks. So it's more efficient if there are already realpaths in `$LOAD_PATH`, and less surprising for everybody (e.g., paths in `$LOADED_FEATURES` are actual concatenation of one of the `$LOAD_PATH` + `/` + required feature). ______________ # Tasks: - [x] Describe the problem / feature - [x] Write tests - [x] Write code to solve the problem - [x] Get code review from coworkers / friends I will abide by the [code of conduct](https://github.com/rubygems/rubygems/blob/master/CODE_OF_CONDUCT.md).

@colby-swandale

7100: Prefer `require_relative` for internal requires r=deivid-rodriguez a=deivid-rodriguez ### What was the end-user problem that led to this PR? The problem was that `bundler` seems to, in some very rare cases, leak to the copy of itself installed as a default gem. I have been able to reproduce this only for stuff that we have already fixed. For example: #6502. However, I have the gut feeling that this can still happen under some conditions, because sometimes we still get reports from people using bundler 2, and getting the error "You must user Bundler 2 or greater with this Gemfile". ### What was your diagnosis of the problem? My diagnosis was that somehow, due to the complicated LOAD_PATH manipulation bundler does, we may endup requiring bundler files in another copy of bundler. ### What is your fix for the problem, implemented in this PR? My fix is not really a fix, although it _might_ prevent the potential issue from happening. As @colby-swandale would say, we should fix the real culprit instead. However, I think using `require_relative` is a better practice anyways, because it makes it clear that you are requiring "internal" files and not files from some dependencies. And it should also be faster because it does not search the LOAD_PATH. And it skips the rubygems monkeypatches to `require`, which seems also good. ### Why did you choose this fix out of the possible options? I chose this fix because I think it's a good practice. Co-authored-by: David Rodríguez <deivid.rodriguez@riseup.net>

ojab mentioned this pull request Apr 23, 2018

require 'bundler/setup' fails on 2.5.1 if bundler is located in symlinked directory #6465

Closed

ojab force-pushed the 1-16-stable branch from b64853a to 753fbaa Compare April 27, 2018 13:40

ojab changed the base branch from 1-16-stable to master April 27, 2018 13:41

ojab force-pushed the 1-16-stable branch from 753fbaa to b101433 Compare April 27, 2018 14:11

segiddins reviewed May 1, 2018

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ojab force-pushed the 1-16-stable branch from b101433 to 84a2049 Compare May 1, 2018 15:34

ojab changed the title ~~[RFC] Use realpath in clean_load_path~~ Use realpath in clean_load_path May 1, 2018

ojab force-pushed the 1-16-stable branch 18 times, most recently from f14c04e to c47f8cd Compare May 2, 2018 14:20

eregon mentioned this pull request Jul 9, 2018

Expand symlinks in gem path rubygems/rubygems#2352

Merged

4 tasks

indirect added 7 commits July 9, 2018 20:38

recursively follow symlinks

e97d0d7

follow symlinks in bundler_ruby_lib as well

736c583

prevent explosions on Ruby 1.8

b91dd5d

delete non-gem copies of Bundler in site_ruby

ec39b74

use FileUtils _after_ it is required

67f026c

maybe this will resolve the intermittent Travis failures

8779946

only realpath things that exist

865ec52

bundlerbot merged commit 865ec52 into rubygems:master Jul 10, 2018

indirect removed their request for review July 10, 2018 07:03

eregon reviewed Jul 10, 2018

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kares mentioned this pull request Jul 16, 2018

Can't find bundler/shared_helpers after upgrade to jruby 9.2.0.0 jruby/warbler#432

Closed

deivid-rodriguez mentioned this pull request Sep 9, 2018

Fix local spec failure #6694

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deivid-rodriguez mentioned this pull request Feb 16, 2019

Bundler::SharedHelpers.clean_load_path does cleanup the default load_path on jruby #4565

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This was referenced Apr 4, 2019

Fix symlink spec on ruby 2.6 #6951

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Prefer require_relative for internal requires #7100

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Use realpath in clean_load_path #6502

Use realpath in clean_load_path #6502

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eregon commented Jul 10, 2018 • edited

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eregon Aug 20, 2018

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eregon commented Jul 10, 2018 •

edited