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Applied Bioinformatics Core |
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Here, you can find the Rmarkdown files that we used during the last two days of our class.
They may not be completely fool proof since I have not tested them extensively, but they should give you a good idea of what we did during class.
The full 80+pages course notes can be found in the folder here in this repo, or go to our server.
Before there was MultiQC, you had to do your QC output wrangling yourself. This repo for previous class versions contains additional scripts that show you how some of the images (e.g., the bar charts of read alignment percentages) within the report were produced.