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fix: memory efficient poa bug fix #552

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fix: memory efficient poa bug fix #552

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bbde79f
fixes set and get of start cell
lorewar2 Sep 13, 2023
e586b24
Merge branch 'master' into poa_small_fix
johanneskoester Oct 18, 2023
60e6bf3
fix row end set and get
lorewar2 Nov 14, 2023
fab758d
Merge branch 'master' into poa_small_fix
lorewar2 Nov 14, 2023
5934990
out of band fix
lorewar2 Nov 20, 2023
157f9c0
Merge branch 'poa_small_fix' of https://github.com/lorewar2/rust-bio …
lorewar2 Nov 20, 2023
8cadb79
0 len rows skip
lorewar2 Nov 21, 2023
ae7f3b3
Merge branch 'master' into poa_small_fix
lorewar2 Jan 11, 2024
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4 changes: 2 additions & 2 deletions src/alignment/poa.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -173,15 +173,15 @@ impl Traceback {

fn set(&mut self, i: usize, j: usize, cell: TracebackCell) {
// set the matrix cell if in band range
if !(self.matrix[i].1 > j || self.matrix[i].2 < j) {
if !(self.matrix[i].1 >= j || self.matrix[i].2 < j) {
let real_position = j - self.matrix[i].1;
self.matrix[i].0[real_position] = cell;
}
}

fn get(&self, i: usize, j: usize) -> &TracebackCell {
// get the matrix cell if in band range else return the appropriate values
if !(self.matrix[i].1 > j || self.matrix[i].2 < j) {
if !(self.matrix[i].1 >= j || self.matrix[i].2 < j) {
let real_position = j - self.matrix[i].1;
return &self.matrix[i].0[real_position];
}
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