This is code to replicate the analyses and figures from my August 2020 submission to BMC Medicine entitled Early detection of cholera epidemics to support control in fragile and conflict-affected states: estimated delays and potential impacts. It presents an analysis of the delays in detection for 79 cholera outbreaks, and model-based estimation of outbreak size at delays.
ruwanepi/Detection-analysis
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Analysis of the delays in detection for 79 cholera outbreaks, and model-based estimation of outbreak size at delays
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