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add qc script
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ryanlayer committed Apr 9, 2018
1 parent 0d068f9 commit 4426047
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion examples/cistrome/get_qc.sh
Expand Up @@ -2,7 +2,7 @@

echo -e "id\tmap\tpeaks\tfastqc\tfrip\tpbc\tmotif_judge\tdhs"

for i in `cat data/TF_human_data_information.txt | cut -f 1`; do
for i in `cat TF_human_data_information.txt | cut -f 1`; do
echo -en "$i\t"
curl -s http://dc2.cistrome.org/api/inspector?id=$i \
| jq -cr '.qc.judge | [.map, .peaks, .fastqc, .frip, .pbc, .motif_judge, .dhs ]' \
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