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when using mlocarna --stockholm <INPUT> with version 2.0.0RC8, the final stockholm alignment does not have the #=GC SS_cons annotation. I did the same command with version 1.9.2.1 and 1.9.2.3, and in both cases the annotation line was present.
For 2.0.0RC8, I have to explicitly call mlocarna --stockholm --consensus-structure alifold <INPUT> in order to get the same behavior. I was not able to see from the release note / manual, whether this is intended, thus I created this issue.
Greetings from Jena!
Kevin
The text was updated successfully, but these errors were encountered:
Thanks for pointing this out. I intentionally deactivated the computation by default, since it can take significant time especially for large alignments. Unfortunately, this info is 'hidden' in the ChangeLog. Indeed, --consensus-structure alifold gets the annotation back.
Hi there,
when using
mlocarna --stockholm <INPUT>
with version 2.0.0RC8, the final stockholm alignment does not have the#=GC SS_cons
annotation. I did the same command with version 1.9.2.1 and 1.9.2.3, and in both cases the annotation line was present.For 2.0.0RC8, I have to explicitly call
mlocarna --stockholm --consensus-structure alifold <INPUT>
in order to get the same behavior. I was not able to see from the release note / manual, whether this is intended, thus I created this issue.Greetings from Jena!
Kevin
The text was updated successfully, but these errors were encountered: