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Updated conda install
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PauBadiaM committed Feb 20, 2024
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6 changes: 3 additions & 3 deletions README.md
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[![Documentation Status](https://readthedocs.org/projects/decoupler-py/badge/?version=latest)](https://decoupler-py.readthedocs.io/en/latest/?badge=latest)
[![codecov](https://codecov.io/gh/saezlab/decoupler-py/branch/main/graph/badge.svg?token=TM0P29KKN5)](https://codecov.io/gh/saezlab/decoupler-py)

[![Conda page](https://anaconda.org/bioconda/decoupler/badges/version.svg)](https://anaconda.org/bioconda/decoupler)
[![Conda downloads](https://anaconda.org/bioconda/decoupler/badges/downloads.svg)](https://anaconda.org/bioconda/decoupler)
[![Conda page](https://img.shields.io/conda/vn/conda-forge/decoupler-py.svg)](https://anaconda.org/conda-forge/decoupler-py)
[![Conda downloads](https://img.shields.io/conda/dn/conda-forge/decoupler-py.svg)](https://anaconda.org/conda-forge/decoupler-py)
<!-- badges: end -->

`decoupler` is a package containing different enrichment statistical methods to extract biological activities from omics data within a unified framework.
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It can also be installed from `conda` and `mamba` (this includes extra dependencies):
```
mamba create -n=decoupler -c conda-forge -c bioconda decoupler
mamba create -n=decoupler conda-forge::decoupler-py
```

Alternatively, to stay up-to-date with the newest unreleased version, install from source:
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8 changes: 4 additions & 4 deletions docs/source/index.rst
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.. |Codecov| image:: https://codecov.io/gh/saezlab/decoupler-py/branch/main/graph/badge.svg?token=TM0P29KKN5
:target: https://codecov.io/gh/saezlab/decoupler-py

.. |Conda| image:: https://anaconda.org/bioconda/decoupler/badges/version.svg
:target: https://anaconda.org/bioconda/decoupler
.. |Conda| image:: https://img.shields.io/conda/vn/conda-forge/decoupler-py.svg
:target: https://anaconda.org/conda-forge/decoupler-py

.. |CondaDownloads| image:: https://anaconda.org/bioconda/decoupler/badges/downloads.svg
:target: https://anaconda.org/bioconda/decoupler
.. |CondaDownloads| image:: https://img.shields.io/conda/dn/conda-forge/decoupler-py.svg
:target: https://anaconda.org/conda-forge/decoupler-py

``decoupler`` is a package containing different statistical methods to extract biological activities from omics data within a unified framework. It allows to flexibly test any enrichment method with any prior knowledge resource and incorporates methods that take into account the sign and weight. It can be used with any omic, as long as its features can be linked to a biological process based on prior knowledge. For example, in transcriptomics gene sets regulated by a transcription factor, or in phospho-proteomics phosphosites that are targeted by a kinase.

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2 changes: 1 addition & 1 deletion docs/source/installation.rst
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.. code-block:: console
mamba create -n=decoupler -c conda-forge -c bioconda decoupler
mamba create -n=decoupler conda-forge::decoupler-py
Development Version
-------------------
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