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Rich #47

Merged
merged 166 commits into from Jan 14, 2021
Merged

Rich #47

merged 166 commits into from Jan 14, 2021

Commits on Nov 24, 2020

  1. Updates to config.py

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  2. Updates to utils/

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    saforem2 committed Nov 24, 2020
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  3. Updates to dynamics/

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    saforem2 committed Nov 24, 2020
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  4. Updates to train.py

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    saforem2 committed Nov 24, 2020
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  5. Updates to test/test_training.py

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Commits on Nov 25, 2020

  1. Updates to doc/*

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  2. Updates to dynamics/*

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    saforem2 committed Nov 25, 2020
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  3. Adds helper fn for getting intQ, sinQ to GaugeLattice

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    saforem2 committed Nov 25, 2020
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  4. Updates to utils/plotting_utils.py

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    saforem2 committed Nov 25, 2020
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  5. Clean up utils/{training,inference}_utils.py

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    saforem2 committed Nov 25, 2020
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  6. Adds numpy json Encoder to utils/file_io.py

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    saforem2 committed Nov 25, 2020
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  7. Updates to test/test_training.py

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  8. Updates to bin/test_configs.json

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    saforem2 committed Nov 25, 2020
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Commits on Nov 26, 2020

  1. Updates to utils/data_containers.py

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  2. Adds notebooks/inference_from_thetaGPU.ipynb

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    saforem2 committed Nov 26, 2020
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Commits on Nov 29, 2020

  1. Replaces tf.gather(x, idxs) with x[idxs] in BaseDynamics

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  2. Replaces / with _ in var names in tf.keras.Model object

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  3. Updates to tests/test_training.py

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  4. Adds mplstyle.use('fast') to utils/plotting_utils.py'

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  5. Wraps calls to plot_data() with timer

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  6. Explicitly close plots in utils/plotting_utils.py

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  7. Wraps az.plot_trace() call in try/except block

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  8. Adds bin/train_thetaGPU.sh

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  9. Updates to how beta is initialized

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  10. Ensure consistent (lowercase) names throughout

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  11. Updates to run_inference_from_log_dir() in utils/inference_utils.py

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  12. Updates to run_inference_from_log_dir() in utils/inference_utils.py

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  13. Ensure directory exists before adding inference results to .csv file

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  14. Explicitly close plots in utils/data_containers.py

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  15. Updates to utils/plotting_utils.py

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  16. Updates to utils/inference_utils.py

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  17. Cleaning up utils/file_io.py

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Commits on Nov 30, 2020

  1. General improvements, remove direction from HMC

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    saforem2 committed Nov 30, 2020
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  2. Updates to tests/test_training.py

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  3. Updates to bin/train_configs.json

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    saforem2 committed Nov 30, 2020
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  4. Adds num_chains arg to plot_data

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    saforem2 committed Nov 30, 2020
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  5. Adds inference.py

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  6. Fixes bug in `dynamics/gauge_dynamics.py

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    saforem2 committed Nov 30, 2020
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  7. Changes to how networks are restored in dynamics/gauge_dynamics.py

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Commits on Dec 1, 2020

  1. Explicitly skip existing HMC run (search recursively!)

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    saforem2 committed Dec 1, 2020
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  2. Fixes minor bug in utils/inference_utils.py

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    saforem2 committed Dec 1, 2020
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  3. Minor changes to hmc.py

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    saforem2 committed Dec 1, 2020
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  4. Adds notebooks/tunneling_rate_compare_2020_10_06.ipynb

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    saforem2 committed Dec 1, 2020
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Commits on Dec 2, 2020

  1. Only plot subset of chains (improve performance) in training plots

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  2. Adds beta to CLI parameters in inference.py

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    saforem2 committed Dec 2, 2020
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Commits on Dec 3, 2020

  1. Updates to utils/inference_utils.py

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  2. Updates to inference.py

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    saforem2 committed Dec 3, 2020
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  3. Adds ability to specify eps from CLI in inference.py

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    saforem2 committed Dec 3, 2020
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  4. Updates to utils/plotting_utils.py

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    saforem2 committed Dec 3, 2020
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Commits on Dec 4, 2020

  1. Switch to using dataclasses for configs in dynamics/

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  2. Switch to using dataclasses for configs in network/

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    saforem2 committed Dec 4, 2020
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  3. Updates to utils/plotting_utils.py

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    saforem2 committed Dec 4, 2020
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Commits on Dec 5, 2020

  1. Updates to utils/training_utils.py

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  2. Cleaning up train.py

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    saforem2 committed Dec 5, 2020
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  3. Tighten up ridgeplots

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    saforem2 committed Dec 5, 2020
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  4. Cleaning up utils/inference_utils.py

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    saforem2 committed Dec 5, 2020
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  5. Cleaning up utils/

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    saforem2 committed Dec 5, 2020
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  6. Cleaning up lattice/utils.py

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    saforem2 committed Dec 5, 2020
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  7. Cleaning up config.py

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    saforem2 committed Dec 5, 2020
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  8. Changes to bin/train_configs.json

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  9. Updates to hmc.py from thetaGPU

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    saforem2 committed Dec 5, 2020
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  10. Updates to notebooks/

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Commits on Dec 10, 2020

  1. Adds (dynamic) step dependent step-size, eps

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    saforem2 committed Dec 10, 2020
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  2. Updates training_utils.py for step-dep eps

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    saforem2 committed Dec 10, 2020
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Commits on Dec 11, 2020

  1. Splits dynamic step-sizes for x, v

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  2. Updates to utils/inference_utils.py

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    saforem2 committed Dec 11, 2020
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Commits on Dec 14, 2020

  1. Fixes minor bug in dynamics/

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  2. Updates to tests

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  3. Adds autocorr fns to utils/data_utils.py

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  4. Updates to utils/inference_utils.py

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  5. Updates to utils/training_utils.py

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  6. Updates to utils/plotting_utils.py

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Commits on Dec 16, 2020

  1. Adds notebooks/autocorr_stats1.ipynb

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  2. Adds separate networks for each of the x sub-updates

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    saforem2 committed Dec 16, 2020
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Commits on Dec 17, 2020

  1. Fixes incorrect size bug when using single net in GaugeDynamics

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Commits on Dec 21, 2020

  1. Updates to dynamics/*

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  2. Removes trailing new lines

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    saforem2 committed Dec 21, 2020
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  3. Updates to utils/__init__.py

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  4. Updates to utils/{training_utils.py,inference_utils.py}

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  5. Adds batch_size arg to inference.py

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  6. Updates to utils/plotting_utils.py

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    saforem2 committed Dec 21, 2020
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  7. Adds Rich formatted output to utils/file_io.py

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  8. Updates to utils/data_containers.py

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  9. Updates to utils/data_utils.py

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  10. Updates to notebooks/autocorr_stats1.ipynb

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  11. Adds check for dynamics.xeps

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  12. Updates to utils/inference_utils.py

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  13. Updates to utils/inference_utils.py

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  14. Updates to utils/inference_utils.py

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  15. Updates to utils/inference_utils.py

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  16. Updates to utils/{training_utils.py,inference_utils.py}

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  17. Updates to train.py

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  18. Catches uninitialized writer bug

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  19. Catches uninitialized writer bug

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Commits on Dec 22, 2020

  1. Updates to notebooks/autocorr_stats1.ipynb

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Commits on Dec 28, 2020

  1. Updates to notebooks/

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Commits on Dec 29, 2020

  1. Clean up logging in GaugeDynamics

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  2. Creates rich branch (with Rich formatted output)

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  3. Updates to utils/file_io.py, utils/training_utils.py

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  4. Updates to utils/file_io.py

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  5. Updates to notebooks/autocorr_stats1.ipynb

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  6. Adds notebooks/autocorr_stats2.ipynb

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  7. Updates to utils/plotting_utils.py

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  8. Updates to SKEYS in utils/__init__.py

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  9. Updates to train.py

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  10. Updates logging to use Rich throughout

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Commits on Dec 30, 2020

  1. Adds inference_scripts for distributed HMC on multiple GPUs

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Commits on Jan 1, 2021

  1. Fixes minor bugs in utils/{training_utils.py,plotting_utils.py}

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    saforem2 committed Jan 1, 2021
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  2. Updates to notebooks/*

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Commits on Jan 4, 2021

  1. Removes deprecated arg from bin/hmc_configs.json

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  2. Fixes bug caused by incorrect metrics in dynamics.GaugeDynamics

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  3. Fixes minor bugs in utils/{training_utils.py,plotting_utils.py} (2)

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  4. Fixes bug caused by incorrect metrics in dynamics.GaugeDynamics (3)

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  5. Updates to hmc code

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  6. Fixes hmc bugs

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  7. Moves inference_scripts/ to bin/

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  8. Updates to hmc code

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Commits on Jan 5, 2021

  1. Removes verbose metrics from HMC

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  2. Adds utils/autocorr.py

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  3. Updates to utils/autocorr.py

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  4. Updates to utils/autocorr.py (1)

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Commits on Jan 6, 2021

  1. Updates to utils/autocorr.py (2)

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  2. Updates to utils/autocorr.py (3)

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  3. Updates to utils/autocorr.py (4)

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  4. Updates to utils/autocorr.py (5)

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  5. Updates to utils/autocorr.py (6)

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  6. Updates to utils/autocorr.py (7)

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  7. Changes to how autocorr computed

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Commits on Jan 7, 2021

  1. Refactoring utils/file_io.py

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  2. Adds ability to specify optimizer in BaseDynamics

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  3. Refactoring utils/inference_utils.py

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  4. Updates to config files

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  5. Updates to utils/data_containers.py

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  6. Updates utils/autocorr.py

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  7. Removes CBARS from utils/inference_utils.py

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  8. Removes CBARS from utils/inference_utils.py

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  9. Fixes bug in utils/inference_utils.py

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Commits on Jan 8, 2021

  1. Updates to utils/autocorr.py (8)

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  2. Fixes bug in utils/autocorr.py

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  3. Updates to utils/autocorr.py

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  4. Enforce path requirement when loading charge data in utils/autocorr.py

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  5. Adds check for dynamic step size when calculating params for autocorrs

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Commits on Jan 9, 2021

  1. Removes incorrect import from utils/training_utils.py

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Commits on Jan 11, 2021

  1. Adds notebook for running HMC via tf-probability

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  2. Prepends string passed to io.rule with timestamp

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  3. Updates to `utils/{training_utils.py,inference_utils.py,plotting_util… 

    …s.py}`
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  4. Adds unnormalized_log_prob method to GaugeLattice

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Commits on Jan 13, 2021

  1. Updates to doc/*

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  2. Updates to utils/autocorr.py (9)

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  3. Changes to how metrics string is generated in DataContainers

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  4. Changes latice_shape to x_shape throughout lattice/

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  5. Changes latice_shape to x_shape

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  6. Adds doc/autocorrs/autocorrs.tex

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Commits on Jan 14, 2021

  1. Updates to .gitignore

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  2. Renaming lattice_shape to x_shape

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  3. Renaming lattice_shape to x_shape

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  4. Renaming lattice_shape to x_shape

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  5. Updates to GaugeDynamics

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  6. Updates to GaugeDynamics

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  7. Updates to .gitignore

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    saforem2 committed Jan 14, 2021
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  8. Type annotataions in utils/file_io.py

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  9. Updates to notebooks/autocorr_stats1.ipynb

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    saforem2 committed Jan 14, 2021
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  10. Fixing CodeFactor issues

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    saforem2 committed Jan 14, 2021
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  11. Fixing CodeFactor issues

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    saforem2 committed Jan 14, 2021
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  12. Fixing CodeFactor issues

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    saforem2 committed Jan 14, 2021
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  13. Fixing CodeFactor issues

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    saforem2 committed Jan 14, 2021
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