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module_list.py
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module_list.py
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import os
from glob import glob
from distutils.extension import Extension
from sage.env import SAGE_LOCAL
SAGE_INC = os.path.join(SAGE_LOCAL, 'include')
#########################################################
### BLAS setup
#########################################################
## Choose cblas library -- note -- make sure to update sage/misc/cython.py
## if you change this!!
if 'SAGE_BLAS' in os.environ:
BLAS=os.environ['SAGE_BLAS']
BLAS2=os.environ['SAGE_BLAS']
elif os.path.exists('%s/lib/libatlas.so'%os.environ['SAGE_LOCAL']):
BLAS='cblas'
BLAS2='atlas'
elif os.path.exists('/usr/lib/libcblas.dylib') or \
os.path.exists('/usr/lib/libcblas.so'):
BLAS='cblas'
BLAS2='cblas'
elif os.path.exists('/usr/lib/libblas.dll.a'):
BLAS='gslcblas'
BLAS2='gslcblas'
else:
# This is very slow (?), but *guaranteed* to be available.
BLAS='gslcblas'
BLAS2='gslcblas'
#########################################################
### Commonly used definitions and aliases
#########################################################
singular_incs = [SAGE_INC + '/singular', SAGE_INC + '/factory']
aliases = dict(
GSL_LIBRARIES=['gsl', BLAS, BLAS2],
INTERRUPT_DEPENDS=glob("sage/ext/interrupt/*.h"),
)
#########################################################
### M4RI flags
#########################################################
import ast
m4ri_extra_compile_args = ["-std=c99"]
for line in open(SAGE_INC + "/m4ri/m4ri_config.h"):
if not line.startswith("#define __M4RI_SIMD_CFLAGS"):
continue
m4ri_sse2_cflags = ast.literal_eval(line[len("#define __M4RI_SIMD_CFLAGS"):].strip())
m4ri_extra_compile_args.extend( [flag.strip() for flag in m4ri_sse2_cflags.split(" ") if flag.strip()] )
break
singular_libs = ['singular', 'flint', 'ntl', 'gmpxx', 'gmp', 'readline', 'm']
#########################################################
### Givaro flags
#########################################################
givaro_extra_compile_args =['-D__STDC_LIMIT_MACROS']
#########################################################
### Library order
#########################################################
# This list defines the *order* of linking libraries. A library should
# be put *before* any library it links to. Cython allows
# defining libraries using "# distutils: libraries = LIB". However, if
# there are multiple libraries, the order is undefined so we need to
# manually reorder the libraries according to this list. The order is
# important in particular for Cygwin. Any libraries which are not
# listed here will be added at the end of the list (without changing
# their relative order). There is one exception: stdc++ is always put
# at the very end of the list.
library_order_list = [
"singular", "ec", "ecm",
"linboxsage", "ntl", "iml", "linbox", "givaro",
"gsl", "pari", "flint", "ratpoints", "ecl", "glpk", "ppl",
"arb", "fplll", "mpfi", "mpfr", "mpc", "gmp", "gmpxx",
"polybori",
"polybori_groebner",
"m4rie", "m4ri",
"zn_poly", "gap",
"gd", "png12",
"m", "readline", "Lfunction",
BLAS, BLAS2,
"cryptominisat", "z"]
# Make a dict with library:order pairs, where the order are negative
# integers sorted according to library_order_list. When sorting,
# unlisted libraries have order 0, so they appear after the libraries
# in library_order_list.
n = len(library_order_list)
library_order = {}
for i in range(n):
lib = library_order_list[i]
library_order[lib] = i-n
library_order["stdc++"] = 1000
#############################################################
### List of modules
###
### Note that the list of modules is sorted alphabetically
### by extension name. Please keep this list sorted when
### adding new modules!
###
#############################################################
from sage_setup.optional_extension import OptionalExtension
UNAME = os.uname()
def uname_specific(name, value, alternative):
if name in UNAME[0]:
return value
else:
return alternative
ext_modules = [
################################
##
## sage.algebras
##
################################
Extension('sage.algebras.quatalg.quaternion_algebra_element',
sources = ['sage/algebras/quatalg/quaternion_algebra_element.pyx'],
language='c++',
libraries = ["flint", "gmp", "gmpxx", "m", "ntl"]),
Extension('sage.algebras.letterplace.free_algebra_letterplace',
sources = ['sage/algebras/letterplace/free_algebra_letterplace.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.algebras.letterplace.free_algebra_element_letterplace',
sources = ['sage/algebras/letterplace/free_algebra_element_letterplace.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.algebras.letterplace.letterplace_ideal',
sources = ['sage/algebras/letterplace/letterplace_ideal.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.algebras.quatalg.quaternion_algebra_cython',
sources = ['sage/algebras/quatalg/quaternion_algebra_cython.pyx'],
language='c++',
libraries = ["flint", "gmp", "gmpxx", "m", "ntl"]),
################################
##
## sage.calculus
##
################################
Extension('*', ['sage/calculus/*.pyx']),
################################
##
## sage.categories
##
################################
Extension('*', ['sage/categories/**/*.pyx']),
################################
##
## sage.coding
##
################################
Extension('sage.coding.codecan.codecan',
sources = ['sage/coding/codecan/codecan.pyx'],
libraries = ['flint']),
Extension('*', ['sage/coding/**/*.pyx']),
################################
##
## sage.combinat
##
################################
Extension('*', ['sage/combinat/**/*.pyx']),
Extension('sage.combinat.subword_complex_c',
sources=['sage/combinat/subword_complex_c.pyx']),
################################
##
## sage.crypto
##
################################
Extension('*', ['sage/crypto/*.pyx']),
################################
##
## sage.data_structures
##
################################
Extension('*', ['sage/data_structures/*.pyx']),
################################
##
## sage.ext
##
################################
Extension('*', ['sage/ext/**/*.pyx']),
################################
##
## sage.finance
##
################################
Extension('*', ['sage/finance/*.pyx']),
################################
##
## sage.functions
##
################################
Extension('sage.functions.prime_pi',
sources = ['sage/functions/prime_pi.pyx'],
extra_compile_args = ['-std=c99']),
################################
##
## sage.games
##
################################
Extension('*', ['sage/games/*.pyx']),
################################
##
## sage.geometry
##
################################
Extension('sage.geometry.point_collection',
sources = ['sage/geometry/point_collection.pyx']),
Extension('sage.geometry.toric_lattice_element',
sources = ['sage/geometry/toric_lattice_element.pyx']),
Extension('sage.geometry.integral_points',
sources = ['sage/geometry/integral_points.pyx']),
Extension('sage.geometry.triangulation.base',
sources = ['sage/geometry/triangulation/base.pyx',
'sage/geometry/triangulation/functions.cc',
'sage/geometry/triangulation/data.cc',
'sage/geometry/triangulation/triangulations.cc'],
depends = ['sage/geometry/triangulation/functions.h',
'sage/geometry/triangulation/data.h',
'sage/geometry/triangulation/triangulations.h'],
language="c++"),
################################
##
## sage.graphs
##
################################
Extension('sage.graphs.asteroidal_triples',
sources = ['sage/graphs/asteroidal_triples.pyx']),
Extension('sage.graphs.chrompoly',
sources = ['sage/graphs/chrompoly.pyx']),
Extension('sage.graphs.cliquer',
sources = ['sage/graphs/cliquer.pyx']),
Extension('sage.graphs.centrality',
sources = ['sage/graphs/centrality.pyx']),
Extension('sage.graphs.independent_sets',
sources = ['sage/graphs/independent_sets.pyx']),
Extension('sage.graphs.graph_decompositions.fast_digraph',
sources = ['sage/graphs/graph_decompositions/fast_digraph.pyx']),
Extension('sage.graphs.graph_decompositions.vertex_separation',
sources = ['sage/graphs/graph_decompositions/vertex_separation.pyx']),
Extension('sage.graphs.graph_decompositions.graph_products',
sources = ['sage/graphs/graph_decompositions/graph_products.pyx']),
Extension('sage.graphs.convexity_properties',
sources = ['sage/graphs/convexity_properties.pyx']),
Extension('sage.graphs.comparability',
sources = ['sage/graphs/comparability.pyx']),
Extension('sage.graphs.generic_graph_pyx',
sources = ['sage/graphs/generic_graph_pyx.pyx']),
Extension('sage.graphs.graph_generators_pyx',
sources = ['sage/graphs/graph_generators_pyx.pyx']),
Extension('sage.graphs.distances_all_pairs',
sources = ['sage/graphs/distances_all_pairs.pyx']),
Extension('sage.graphs.base.graph_backends',
sources = ['sage/graphs/base/graph_backends.pyx']),
Extension('sage.graphs.base.static_dense_graph',
sources = ['sage/graphs/base/static_dense_graph.pyx']),
Extension('sage.graphs.base.static_sparse_graph',
sources = ['sage/graphs/base/static_sparse_graph.pyx'],
language = 'c++'),
Extension('sage.graphs.base.static_sparse_backend',
sources = ['sage/graphs/base/static_sparse_backend.pyx']),
Extension('sage.graphs.weakly_chordal',
sources = ['sage/graphs/weakly_chordal.pyx']),
Extension('sage.graphs.matchpoly',
sources = ['sage/graphs/matchpoly.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
OptionalExtension("sage.graphs.mcqd",
["sage/graphs/mcqd.pyx"],
language = "c++",
package = 'mcqd'),
OptionalExtension("sage.graphs.bliss",
["sage/graphs/bliss.pyx"],
language = "c++",
libraries = ['bliss'],
package = 'bliss'),
OptionalExtension('sage.graphs.modular_decomposition',
sources = ['sage/graphs/modular_decomposition.pyx'],
libraries = ['modulardecomposition'],
package = 'modular_decomposition'),
Extension('sage.graphs.planarity',
sources = ['sage/graphs/planarity.pyx'],
libraries=['planarity']),
Extension('sage.graphs.strongly_regular_db',
sources = ['sage/graphs/strongly_regular_db.pyx']),
Extension('sage.graphs.graph_decompositions.rankwidth',
sources = ['sage/graphs/graph_decompositions/rankwidth.pyx'],
libraries=['rw']),
Extension('sage.graphs.graph_decompositions.bandwidth',
sources = ['sage/graphs/graph_decompositions/bandwidth.pyx']),
Extension('sage.graphs.graph_decompositions.cutwidth',
sources = ['sage/graphs/graph_decompositions/cutwidth.pyx']),
OptionalExtension('sage.graphs.graph_decompositions.tdlib',
sources = ['sage/graphs/graph_decompositions/tdlib.pyx'],
language="c++",
package = 'tdlib'),
Extension('sage.graphs.spanning_tree',
sources = ['sage/graphs/spanning_tree.pyx']),
Extension('sage.graphs.trees',
sources = ['sage/graphs/trees.pyx']),
Extension('sage.graphs.genus',
sources = ['sage/graphs/genus.pyx']),
Extension('sage.graphs.hyperbolicity',
sources = ['sage/graphs/hyperbolicity.pyx']),
Extension('sage.graphs.base.c_graph',
sources = ['sage/graphs/base/c_graph.pyx']),
Extension('sage.graphs.base.sparse_graph',
sources = ['sage/graphs/base/sparse_graph.pyx']),
Extension('sage.graphs.base.dense_graph',
sources = ['sage/graphs/base/dense_graph.pyx']),
Extension('sage.graphs.base.boost_graph',
sources = ['sage/graphs/base/boost_graph.pyx'],
language = 'c++'),
################################
##
## sage.groups
##
################################
Extension('*', ['sage/groups/*.pyx']),
Extension('sage.groups.semimonomial_transformations.semimonomial_transformation',
sources = ['sage/groups/semimonomial_transformations/semimonomial_transformation.pyx']),
Extension('sage.groups.matrix_gps.group_element',
sources = ['sage/groups/matrix_gps/group_element.pyx']),
###################################
##
## sage.groups.perm_gps
##
###################################
Extension('sage.groups.perm_gps.permgroup_element',
sources = ['sage/groups/perm_gps/permgroup_element.pyx']),
Extension('sage.groups.perm_gps.partn_ref.automorphism_group_canonical_label',
sources = ['sage/groups/perm_gps/partn_ref/automorphism_group_canonical_label.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.canonical_augmentation',
sources = ['sage/groups/perm_gps/partn_ref/canonical_augmentation.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.double_coset',
sources = ['sage/groups/perm_gps/partn_ref/double_coset.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.refinement_binary',
sources = ['sage/groups/perm_gps/partn_ref/refinement_binary.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.refinement_graphs',
sources = ['sage/groups/perm_gps/partn_ref/refinement_graphs.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.refinement_lists',
sources = ['sage/groups/perm_gps/partn_ref/refinement_lists.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.refinement_matrices',
sources = ['sage/groups/perm_gps/partn_ref/refinement_matrices.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.refinement_python',
sources = ['sage/groups/perm_gps/partn_ref/refinement_python.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref.refinement_sets',
sources = ['sage/groups/perm_gps/partn_ref/refinement_sets.pyx'],
libraries = ['flint'],
extra_compile_args = ['-std=c99']),
Extension('sage.groups.perm_gps.partn_ref2.refinement_generic',
sources = ['sage/groups/perm_gps/partn_ref2/refinement_generic.pyx'],
libraries = ["flint", "gmp", "gmpxx", "stdc++"],
extra_compile_args=["-std=c99"]),
################################
##
## sage.gsl
##
################################
Extension('*', ['sage/gsl/*.pyx']),
################################
##
## sage.interacts
##
################################
Extension('*', ['sage/interacts/*.pyx']),
################################
##
## sage.interfaces
##
################################
Extension('*', ['sage/interfaces/*.pyx']),
################################
##
## sage.lfunctions
##
################################
Extension('sage.lfunctions.zero_sums',
sources = ['sage/lfunctions/zero_sums.pyx'],
libraries = ["m","flint"]),
################################
##
## sage.libs
##
################################
OptionalExtension('sage.libs.coxeter3.coxeter',
sources = ['sage/libs/coxeter3/coxeter.pyx'],
include_dirs = [os.path.join(SAGE_INC, 'coxeter')],
language="c++",
libraries = ['coxeter3'],
package = 'coxeter3'),
Extension('sage.libs.ecl',
sources = ["sage/libs/ecl.pyx"],
libraries = ["ecl"]),
OptionalExtension("sage.libs.fes",
["sage/libs/fes.pyx"],
language = "c",
libraries = ['fes'],
package = 'fes'),
Extension('sage.libs.flint.flint',
sources = ["sage/libs/flint/flint.pyx"],
libraries = ["flint", "gmp", "gmpxx", "m", "stdc++"],
extra_compile_args = ["-std=c99", "-D_XPG6"]),
Extension('sage.libs.flint.fmpz_poly',
sources = ["sage/libs/flint/fmpz_poly.pyx"],
libraries = ["flint", "gmp", "gmpxx", "m", "stdc++"],
extra_compile_args = ["-std=c99", "-D_XPG6"]),
Extension('sage.libs.flint.arith',
sources = ["sage/libs/flint/arith.pyx"],
libraries = ["flint", "gmp", "gmpxx", "m", "stdc++"],
extra_compile_args = ["-std=c99", "-D_XPG6"]),
Extension('sage.libs.fplll.fplll',
sources = ['sage/libs/fplll/fplll.pyx']),
Extension('sage.libs.gmp.pylong',
sources = ['sage/libs/gmp/pylong.pyx']),
Extension('sage.libs.gmp.rational_reconstruction',
sources = ['sage/libs/gmp/rational_reconstruction.pyx']),
Extension('sage.libs.linbox.linbox',
sources = ['sage/libs/linbox/linbox.pyx'],
libraries = ['linboxsage', 'ntl', 'iml', 'linbox',
'givaro', 'mpfr', 'gmp', 'gmpxx', BLAS, BLAS2],
language = 'c++',
extra_compile_args = givaro_extra_compile_args,
depends = [os.path.join(SAGE_INC, 'givaro', 'givconfig.h')]),
Extension('sage.libs.lcalc.lcalc_Lfunction',
sources = ['sage/libs/lcalc/lcalc_Lfunction.pyx'],
libraries = ['m', 'ntl', 'mpfr', 'gmp', 'gmpxx',
'Lfunction'],
extra_compile_args=["-O3", "-ffast-math"],
language = 'c++'),
Extension('sage.libs.libecm',
sources = ['sage/libs/libecm.pyx'],
libraries = ['ecm'],
extra_link_args = uname_specific("Linux", ["-Wl,-z,noexecstack"],
[])),
Extension('sage.libs.lrcalc.lrcalc',
sources = ["sage/libs/lrcalc/lrcalc.pyx"]),
Extension('sage.libs.pari.closure',
sources = ["sage/libs/pari/closure.pyx"],
libraries = ['pari', 'gmp']),
Extension('sage.libs.pari.gen',
sources = ["sage/libs/pari/gen.pyx"]),
Extension('sage.libs.pari.handle_error',
sources = ["sage/libs/pari/handle_error.pyx"]),
Extension('sage.libs.pari.pari_instance',
sources = ["sage/libs/pari/pari_instance.pyx"],
extra_compile_args = ["-std=c99", "-D_XPG6"],
libraries = ['flint']),
Extension('sage.libs.ppl',
sources = ['sage/libs/ppl.pyx', 'sage/libs/ppl_shim.cc']),
Extension('sage.libs.ratpoints',
sources = ["sage/libs/ratpoints.pyx"],
libraries = ["ratpoints"]),
Extension('sage.libs.readline',
sources = ['sage/libs/readline.pyx'],
libraries = ['readline']),
Extension('sage.libs.singular.singular',
sources = ['sage/libs/singular/singular.pyx'],
libraries = ['givaro'] + singular_libs,
language="c++",
include_dirs = singular_incs,
extra_compile_args = givaro_extra_compile_args),
Extension('sage.libs.singular.polynomial',
sources = ['sage/libs/singular/polynomial.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.libs.singular.ring',
sources = ['sage/libs/singular/ring.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.libs.singular.groebner_strategy',
sources = ['sage/libs/singular/groebner_strategy.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.libs.singular.function',
sources = ['sage/libs/singular/function.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs,
extra_compile_args = givaro_extra_compile_args),
Extension('sage.libs.singular.option',
sources = ['sage/libs/singular/option.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.libs.symmetrica.symmetrica',
sources = ["sage/libs/symmetrica/symmetrica.pyx"],
libraries = ["symmetrica"]),
Extension('sage.libs.mpmath.utils',
sources = ["sage/libs/mpmath/utils.pyx"],
libraries = ['mpfr']),
Extension('sage.libs.mpmath.ext_impl',
sources = ["sage/libs/mpmath/ext_impl.pyx"],
libraries = ['mpfr']),
Extension('sage.libs.mpmath.ext_main',
sources = ["sage/libs/mpmath/ext_main.pyx"]),
Extension('sage.libs.mpmath.ext_libmp',
sources = ["sage/libs/mpmath/ext_libmp.pyx"]),
###################################
##
## sage.libs.eclib
##
###################################
Extension('*', ["sage/libs/eclib/*.pyx"]),
################################
##
## sage.libs.gap
##
################################
Extension('sage.libs.gap.util',
sources = ["sage/libs/gap/util.pyx"],
libraries = ['gmp', 'gap', 'm']),
Extension('sage.libs.gap.element',
sources = ["sage/libs/gap/element.pyx"],
libraries = ['gmp', 'gap', 'm']),
Extension('sage.libs.gap.libgap',
sources = ["sage/libs/gap/libgap.pyx"],
libraries = ['gmp', 'gap', 'm']),
###################################
##
## sage.libs.ntl
##
###################################
Extension('sage.libs.ntl.convert',
sources = ["sage/libs/ntl/convert.pyx"],
libraries = ["ntl", "gmp", "gmpxx"],
language='c++'),
Extension('sage.libs.ntl.error',
sources = ["sage/libs/ntl/error.pyx"],
libraries = ["ntl", "gmp", "gmpxx"],
language='c++'),
Extension('sage.libs.ntl.ntl_GF2',
sources = ["sage/libs/ntl/ntl_GF2.pyx"],
libraries = ["ntl", "gmp", "gmpxx"],
language='c++'),
Extension('sage.libs.ntl.ntl_GF2E',
sources = ["sage/libs/ntl/ntl_GF2E.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_GF2EContext',
sources = ["sage/libs/ntl/ntl_GF2EContext.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_GF2EX',
sources = ["sage/libs/ntl/ntl_GF2EX.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_GF2X',
sources = ["sage/libs/ntl/ntl_GF2X.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_lzz_p',
sources = ["sage/libs/ntl/ntl_lzz_p.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_lzz_pContext',
sources = ["sage/libs/ntl/ntl_lzz_pContext.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_lzz_pX',
sources = ["sage/libs/ntl/ntl_lzz_pX.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_mat_GF2',
sources = ["sage/libs/ntl/ntl_mat_GF2.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_mat_GF2E',
sources = ["sage/libs/ntl/ntl_mat_GF2E.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_mat_ZZ',
sources = ["sage/libs/ntl/ntl_mat_ZZ.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZ',
sources = ["sage/libs/ntl/ntl_ZZ.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZX',
sources = ["sage/libs/ntl/ntl_ZZX.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZ_p',
sources = ["sage/libs/ntl/ntl_ZZ_p.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZ_pContext',
sources = ["sage/libs/ntl/ntl_ZZ_pContext.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZ_pE',
sources = ["sage/libs/ntl/ntl_ZZ_pE.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZ_pEContext',
sources = ["sage/libs/ntl/ntl_ZZ_pEContext.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZ_pEX',
sources = ["sage/libs/ntl/ntl_ZZ_pEX.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
Extension('sage.libs.ntl.ntl_ZZ_pX',
sources = ["sage/libs/ntl/ntl_ZZ_pX.pyx"],
libraries = ["ntl", "gmp", "gmpxx", "m"],
language='c++'),
################################
##
## sage.matrix
##
################################
Extension('sage.matrix.action',
sources = ['sage/matrix/action.pyx']),
Extension('sage.matrix.echelon_matrix',
sources = ['sage/matrix/echelon_matrix.pyx']),
Extension('sage.matrix.change_ring',
sources = ['sage/matrix/change_ring.pyx']),
Extension('sage.matrix.matrix',
sources = ['sage/matrix/matrix.pyx']),
Extension('sage.matrix.matrix0',
sources = ['sage/matrix/matrix0.pyx']),
Extension('sage.matrix.matrix1',
sources = ['sage/matrix/matrix1.pyx']),
Extension('sage.matrix.matrix2',
sources = ['sage/matrix/matrix2.pyx']),
Extension('sage.matrix.matrix_complex_double_dense',
sources = ['sage/matrix/matrix_complex_double_dense.pyx']),
Extension('sage.matrix.matrix_cyclo_dense',
sources = ['sage/matrix/matrix_cyclo_dense.pyx'],
language = "c++",
libraries=['ntl']),
Extension('sage.matrix.matrix_dense',
sources = ['sage/matrix/matrix_dense.pyx']),
Extension('sage.matrix.matrix_double_dense',
sources = ['sage/matrix/matrix_double_dense.pyx']),
Extension('sage.matrix.matrix_generic_dense',
sources = ['sage/matrix/matrix_generic_dense.pyx']),
Extension('sage.matrix.matrix_generic_sparse',
sources = ['sage/matrix/matrix_generic_sparse.pyx']),
Extension('sage.matrix.matrix_integer_dense',
sources = ['sage/matrix/matrix_integer_dense.pyx'],
extra_compile_args = ['-std=c99'] + m4ri_extra_compile_args,
libraries = ['iml', 'ntl', 'gmp', 'm', 'flint', BLAS, BLAS2]),
Extension('sage.matrix.matrix_integer_sparse',
sources = ['sage/matrix/matrix_integer_sparse.pyx']),
Extension('sage.matrix.matrix_mod2_dense',
sources = ['sage/matrix/matrix_mod2_dense.pyx'],
libraries = ['m4ri', 'gd', 'png12', 'z'],
extra_compile_args = m4ri_extra_compile_args,
depends = [SAGE_INC + "/png.h", SAGE_INC + "/m4ri/m4ri.h"]),
Extension('sage.matrix.matrix_gf2e_dense',
sources = ['sage/matrix/matrix_gf2e_dense.pyx'],
libraries = ['m4rie', 'm4ri', 'm'],
depends = [SAGE_INC + "/m4rie/m4rie.h"],
extra_compile_args = m4ri_extra_compile_args),
Extension('sage.matrix.matrix_modn_dense_float',
sources = ['sage/matrix/matrix_modn_dense_float.pyx'],
language="c++",
libraries = ['ntl', 'linbox', 'givaro', 'mpfr', 'gmpxx', 'gmp', BLAS, BLAS2],
extra_compile_args = ['-DDISABLE_COMMENTATOR'] + givaro_extra_compile_args),
Extension('sage.matrix.matrix_modn_dense_double',
sources = ['sage/matrix/matrix_modn_dense_double.pyx'],
language="c++",
libraries = ['ntl', 'linbox', 'givaro', 'mpfr', 'gmpxx', 'gmp', BLAS, BLAS2],
extra_compile_args = ["-D_XPG6", "-DDISABLE_COMMENTATOR"]
+ m4ri_extra_compile_args + givaro_extra_compile_args),
Extension('sage.matrix.matrix_modn_sparse',
sources = ['sage/matrix/matrix_modn_sparse.pyx']),
Extension('sage.matrix.matrix_mpolynomial_dense',
sources = ['sage/matrix/matrix_mpolynomial_dense.pyx'],
libraries = singular_libs,
language="c++",
include_dirs = singular_incs),
Extension('sage.matrix.matrix_rational_dense',
sources = ['sage/matrix/matrix_rational_dense.pyx'],
extra_compile_args = ["-std=c99", "-D_XPG6"] + m4ri_extra_compile_args,
libraries = ['iml', 'ntl', 'm', 'flint', BLAS, BLAS2],
depends = [SAGE_INC + '/m4ri/m4ri.h']),
Extension('sage.matrix.matrix_rational_sparse',
sources = ['sage/matrix/matrix_rational_sparse.pyx']),
Extension('sage.matrix.matrix_real_double_dense',
sources = ['sage/matrix/matrix_real_double_dense.pyx']),
Extension('sage.matrix.matrix_sparse',
sources = ['sage/matrix/matrix_sparse.pyx']),
Extension('sage.matrix.matrix_symbolic_dense',
sources = ['sage/matrix/matrix_symbolic_dense.pyx']),
Extension('sage.matrix.matrix_window',
sources = ['sage/matrix/matrix_window.pyx']),
Extension('sage.matrix.misc',
sources = ['sage/matrix/misc.pyx'],
libraries=['mpfr']),
Extension('sage.matrix.strassen',
sources = ['sage/matrix/strassen.pyx']),
################################
##
## sage.matroids
##
################################
Extension('*', ['sage/matroids/*.pyx']),
################################
##
## sage.media
##
################################
Extension('*', ['sage/media/*.pyx']),
################################
##
## sage.misc
##
################################
Extension('*', ['sage/misc/*.pyx']),
# Only include darwin_utilities on OS_X >= 10.5
OptionalExtension('sage.misc.darwin_utilities',
sources = ['sage/misc/darwin_memory_usage.c',
'sage/misc/darwin_utilities.pyx'],
condition = (UNAME[0] == "Darwin" and not UNAME[2].startswith('8.'))),
################################
##
## sage.modular
##
################################
Extension('sage.modular.arithgroup.congroup',
sources = ['sage/modular/arithgroup/congroup.pyx']),
Extension('sage.modular.arithgroup.farey_symbol',
sources = ['sage/modular/arithgroup/farey_symbol.pyx',
'sage/modular/arithgroup/farey.cpp',
'sage/modular/arithgroup/sl2z.cpp']),
Extension('sage.modular.arithgroup.arithgroup_element',
sources = ['sage/modular/arithgroup/arithgroup_element.pyx']),
Extension('sage.modular.modform.eis_series_cython',
sources = ['sage/modular/modform/eis_series_cython.pyx'],
libraries = ["flint"],
extra_compile_args = ['-std=c99']),
Extension('sage.modular.modform.l_series_gross_zagier_coeffs',
sources = ['sage/modular/modform/l_series_gross_zagier_coeffs.pyx']),
Extension('sage.modular.modsym.apply',
sources = ['sage/modular/modsym/apply.pyx'],
libraries = ["flint", "gmp", "gmpxx", "m", "stdc++"],
extra_compile_args=["-std=c99", "-D_XPG6"]),
Extension('sage.modular.modsym.manin_symbol',
sources = ['sage/modular/modsym/manin_symbol.pyx']),
Extension('sage.modular.modsym.relation_matrix_pyx',
sources = ['sage/modular/modsym/relation_matrix_pyx.pyx']),
Extension('sage.modular.modsym.heilbronn',
sources = ['sage/modular/modsym/heilbronn.pyx'],
libraries = ["flint", "gmp", "gmpxx", "m", "stdc++"],
extra_compile_args=["-std=c99", "-D_XPG6"]),
Extension('sage.modular.modsym.p1list',
sources = ['sage/modular/modsym/p1list.pyx']),
################################
##
## sage.modules
##
################################
Extension('sage.modules.finite_submodule_iter',
sources = ['sage/modules/finite_submodule_iter.pyx']),
Extension('sage.modules.free_module_element',
sources = ['sage/modules/free_module_element.pyx']),