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Could there be a public cram API? #619

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detrout opened this issue Nov 9, 2017 · 1 comment
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Could there be a public cram API? #619

detrout opened this issue Nov 9, 2017 · 1 comment

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@detrout
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detrout commented Nov 9, 2017

In discussing packaging issues with htslib in #616 we discussed that there are applications like SeqLib that are embedding copies of htslib to access the cram API.

In an ideal world there would be an official supported htslib cram api.

I filed an issue with SeqLib about this topic here: walaj/SeqLib#21
@jmarshall
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There is an official supported HTSlib CRAM API, in htslib/cram.h. All SeqLib has to do is use it, and in fact the general htsFile API suffices for SeqLib's needs. Addressed by walaj/SeqLib#53.

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@jmarshall @detrout