• C library for high-throughput sequencing data formats

    C 228 177 Updated Feb 20, 2017
  • Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 460 266 Updated Feb 20, 2017
  • Note: tabix and bgzip binaries are now part of the HTSlib project.

    C 49 28 Updated Feb 17, 2017
  • A Java API for high-throughput sequencing data (HTS) formats.

    Java 111 145 Updated Feb 17, 2017
  • This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

    C 110 74 Updated Feb 17, 2017
  • Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 176 64 Updated Feb 13, 2017
  • Maintenance scripts used with the htslib/samtools/bcftools repositories

    Shell 1 Updated Feb 10, 2017
  • The http://www.htslib.org/ web site

    HTML 3 5 Updated Jan 31, 2017
  • Plugins for use with HTSlib

    C 2 Updated Oct 4, 2016
  • The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites

    CSS 1 Updated Jun 10, 2015
  • Sequence Alignment Programming Interface

    C 3 Updated Mar 8, 2012
  • Created Mar 9, 2012