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Specifications of SAM/BAM and related high-throughput sequencing file formats
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Tools (written in C using htslib) for manipulating next-generation sequencing data
C library for high-throughput sequencing data formats
A Java API for high-throughput sequencing data (HTS) formats.
The http://www.htslib.org/ web site
Maintenance scripts used with the htslib/samtools/bcftools repositories
Note: tabix and bgzip binaries are now part of the HTSlib project.
HTSlib crypt4gh plug-in
Staging ground for the development of the next major version of HTSJDK
Plugins for use with HTSlib
The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites
Sequence Alignment Programming Interface