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  1. samtools samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

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  2. htslib htslib Public

    C library for high-throughput sequencing data formats

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  3. bcftools bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

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  4. hts-specs hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

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  5. htsjdk htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

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  6. tabix tabix Public archive

    Note: tabix and bgzip binaries are now part of the HTSlib project.

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