The script calculates Normalized Mutual Information, Mean Squared Error and Cross Correlation between nrrd image stacks and a template. Results saved as a csv file in the image folder. Run the py file in your favorite python3 environment, choose the folder containing the batch of files to process and the template through a dialogue, carefully determine the number of parallel threads based on memory and cpu availability.
#Requirements
- nrrdpy
- numpy
- scikit-learn