missing pseudochr.fasta.gz for Leishmania in Public server

[janxkoci]

Multiple users have problem running Companion with Leishmania mexicana. I have found the issue has been first reported in the repo for standalone version, so I wanted to also bring it to attention here.

I see the same error as the user who reported the original issue, I include the error below for completeness:

/www/companion/annot-web/app/workers/hard_worker.rb:34:in `add_result_file': required file not present: /www/companion/annot-web/public/jobs/9dbbee2d4a721d45b3ef72bd/pseudochr.fasta.gz (RuntimeError)
	/www/companion/annot-web/app/workers/hard_worker.rb:142:in `perform'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/processor.rb:150:in `execute_job'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/processor.rb:132:in `block (2 levels) in process'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/chain.rb:127:in `block in invoke'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-status-0.6.0/lib/sidekiq-status/server_middleware.rb:37:in `call'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/chain.rb:129:in `block in invoke'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/server/active_record.rb:6:in `call'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/chain.rb:129:in `block in invoke'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/server/retry_jobs.rb:74:in `call'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/chain.rb:129:in `block in invoke'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/server/logging.rb:11:in `block in call'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/logging.rb:30:in `with_context'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/server/logging.rb:7:in `call'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/chain.rb:129:in `block in invoke'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/middleware/chain.rb:132:in `invoke'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/processor.rb:127:in `block in process'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/processor.rb:166:in `stats'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/processor.rb:126:in `process'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/processor.rb:79:in `process_one'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/processor.rb:67:in `run'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/util.rb:16:in `watchdog'
	/www/companion/annot-web/vendor/ruby/2.3.0/gems/sidekiq-4.0.2/lib/sidekiq/util.rb:24:in `block in safe_thread'

[asgiraldoc]

Hey, did they give you an answer? I have the same issue for Plasmodium falciparum

[janxkoci]

Nope.