SAPFLUXNET data paper

Data and project folder structure

To run the code in this repository, one needs the following structure within the project folder:

• data: contains the sapfluxnet data version(s), e.g. 0.1.5.Download from here
• maps: contains the necessary base maps
  • maps/Crowther_Nature_Files_Revision_01_WGS84_GeoTiff: contains global tree density map from Crowther in Nature. Download from: here

Scripts to run once:

• read_metadata.R: reads sfn metadata, re-run only if sfn data changes (e.g. new version), writes cache.
• maps_base.R: creates base maps for figures. Stores objects in maps_base.RData.
• datasets_length.R: calculations for datasets periods and duration. Stores objects in dataset_duration_data.RData.

Reproducing results

• Scripts to generate results (figures and tables)

• figures_draft.Rmd: it calls other R scripts. Output: figures_draft.docx

• Scripts to generate the supplement (figures and tables)

• supporting.Rmd: output: - supporting.docx

• Script to generate Appendix A:

• appendix.Rmd: output: - appendix.docx

• Scripts to generate uncertainty estimation (Appendix B)

• sfn_uncertainty.R