Scripts for processing of data presented in: 

Hazell Pickering S, Abdelhalim M, Collas P and Briand N (2024) Alternative isoform expression of key thermogenic genes in human beige adipocytes. Front. Endocrinol. 15:1395750. doi: 10.3389/fendo.2024.1395750


annotations
to produce index files in annotations/*/*_all_exons.txt.gz / _threeprime.bed.gz ect.  

use leafviz script from the leafcutter repository gtf2leafcutter.pl:  leafcutter/leafviz/gtf2leafcutter.pl