Skip to content

Issues: sars-cov-2-variants/lineage-proposals

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

166 Open 1,685 Closed
166 Open 1,685 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

2 JN.1.4.5 FLiRT subbranches being misplaced (10 seqs, 5 countries / 5 seqs, LU 4, FR 1) Discussion Usher Issues with usher related problems
#1851 opened Aug 8, 2024 by Over-There-Is
1
LB.1.3 + 182E emerged from India (6)
#1850 opened Aug 8, 2024 by FedeGueli
XDV.1 + S:G181V + S:K478Q (8, Hubei) S:181 S:456 S:478 XDV
#1849 opened Aug 7, 2024 by FedeGueli
LB.1 + S:P85Q (8 seq, 4 countries) LB.1 S:85
#1848 opened Aug 7, 2024 by DoropFan
2
KP.3.1+S:C1243F (8 sequences, 3 countries) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. KP.3 S:1243
#1847 opened Aug 7, 2024 by Clrs17
2
KP.3.1.1+Orf1a:T1854I, S2661F, S:G181V (16 seqs, 7 countries) KP.3.1.1 S:181
#1846 opened Aug 7, 2024 by aviczhl2
KP.2.3+S:G181V(7 seqs, 4 countries) DeFLiRT S:S31/F32-+S:R346T+S:F456L KP.2.3 S:181
#1845 opened Aug 7, 2024 by aviczhl2
1
KP.2.3+S:478E (3 sequences, Canada/Ireland) KP.2.3 S:478
#1844 opened Aug 7, 2024 by Clrs17
KP.2.3+S:A1174V (53 seqs, 14 countries) KP.2.3 S:1174
#1843 opened Aug 7, 2024 by aviczhl2
KP.3.1+S:477K (2 sequences, USA) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. KP.3 S:477
#1842 opened Aug 7, 2024 by Clrs17
1
KP.3.1.1 + S:L455S>A (2 seqs Uk) KP.3.1.1 S:455
#1841 opened Aug 6, 2024 by FedeGueli
1
XDV.1+ S:G184S,K478I, Orf9b:S50L(12 seqs, 5 countries, 2 with S:F59S, 1 with further S:T22N) ORF9b S:456 S:478 XDV
#1840 opened Aug 6, 2024 by aviczhl2
1
KP.something ( or likely KP.1.1.3/KP.3.1.1 recombinant?) + S:∆S31, R346T, Q493E, ORF6:L61I, N:R413L, C4999T (4 seqs, 2 continents) DeFLiRT S:S31/F32-+S:R346T+S:F456L DeFLuQE S:S31-+S:F456L+S:Q493E Orf6 Rapid review needed recomb? S:1104
#1838 opened Aug 6, 2024 by ryhisner
5
KP.2.2 subbranch with S:Q239R (39 seqs, US) FLiRT FLiRT is an Acronym for S:R346T + S:F456L New mutations Lineage with an unusual/new/interesting mutation S:59 S:239 s:1266
#1837 opened Aug 5, 2024 by Over-There-Is
KP.3.1.1 + S:N148T (10, 4 countries) KP.3.1.1 S:148
#1836 opened Aug 5, 2024 by FedeGueli
1
KP.3.1.1 + S:A626S (11 seqs, 4 countries) KP.3.1.1 S:626
#1835 opened Aug 5, 2024 by FedeGueli
KP.2.3 + S:K478T (Rev) (110) Discussion KP.2.3 Multiple lineages Reversions S:478
#1834 opened Aug 5, 2024 by FedeGueli
2
Rules for proposals transfer to main page Pango repo or from multiple lineages issue to this repo Settings
#1833 opened Aug 5, 2024 by FedeGueli
JN.1.16 subbranch with S:R346T on Orf1a:W2769C branch(11 seqs, 3 countries) Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest FLiRT FLiRT is an Acronym for S:R346T + S:F456L JN.1.16
#1832 opened Aug 5, 2024 by Over-There-Is
LU.2 subbranch with S:Q677P, Orf1a:T1000I and Orf7b:F13L (9 seqs, 4 countries) FLiRT FLiRT is an Acronym for S:R346T + S:F456L s:677 S:688
#1830 opened Aug 5, 2024 by Over-There-Is
JN.1.7 subbranch with S:F456L, Orf1a:I2010V, Orf7a:G26S on Orf1b:S1003G branch (12, 4 countries) NSP13 S:456 S:572 S:1150
#1829 opened Aug 5, 2024 by Over-There-Is
2
KP.1.1.3 + S:F306L (11 seqs , 4 countries including Egypt) DeFLiRT S:S31/F32-+S:R346T+S:F456L KP.1.1 PLPro S:306
#1828 opened Aug 4, 2024 by FedeGueli
KP.2+S:F59L via T21739G(41 seqs, 8 countries) KP.2
#1826 opened Aug 4, 2024 by aviczhl2
2
KP.3.1.1+S:S721G(6 seqs, 4 countries) KP.3.1.1 S:721
#1825 opened Aug 4, 2024 by aviczhl2
KP.3.1.1+Orf1a:P1497L+Orf1b:V2365F,S:Y269H( 3 seqs, 3 countries) KP.3.1.1 S:269
#1824 opened Aug 4, 2024 by aviczhl2
1
ProTip! Mix and match filters to narrow down what you’re looking for.