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JN.1.11.1+S:K1086R(32 seqs, 9 countries) #1364

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aviczhl2 opened this issue Feb 3, 2024 · 5 comments
Closed

JN.1.11.1+S:K1086R(32 seqs, 9 countries) #1364

aviczhl2 opened this issue Feb 3, 2024 · 5 comments
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designated Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest JN.1 S:456 S:1086 S:1104
Milestone
KP.1

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@aviczhl2
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aviczhl2 commented Feb 3, 2024

Currently the fastest JN.1 is JN.1.11.1, and it's getting more spike mutations in undersampled regions.

JN.1.11.1+A24819G(S:K1086R)

GISAID query: A24819G,C7113T
No. of seqs: 5(USA 3(1 from Qatar) UK 1 India 1)

First: EPI_ISL_18856248, India, 2024-1-2
Latest: EPI_ISL_18856156, USA, 2024-1-25

usher
image

One USA seq is put on another branch due to artefactual reversion on 17334.
@aviczhl2 aviczhl2 added S:1104 Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest labels Feb 3, 2024
@aviczhl2
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aviczhl2 commented Feb 8, 2024

+1 Australia +1 Hong Kong

@aviczhl2 aviczhl2 changed the title JN.1.11.1+S:K1086R(5 seqs, 4 countries) JN.1.11.1+S:K1086R(7 seqs, 6 countries) Feb 8, 2024
@aviczhl2
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26, Canada

@aviczhl2 aviczhl2 changed the title JN.1.11.1+S:K1086R(7 seqs, 6 countries) JN.1.11.1+S:K1086R(26 seqs, 7 countries) Feb 13, 2024
@FedeGueli
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It entered usual canadian clusters but as we saw usually especially successful variant in that envinronment are not slow in real world then.

@aviczhl2 aviczhl2 changed the title JN.1.11.1+S:K1086R(26 seqs, 7 countries) JN.1.11.1+S:K1086R(27 seqs, 7 countries) Feb 16, 2024
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32, Singapore, Turkey

@aviczhl2 aviczhl2 changed the title JN.1.11.1+S:K1086R(27 seqs, 7 countries) JN.1.11.1+S:K1086R(32 seqs, 9 countries) Feb 20, 2024
@aviczhl2
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aviczhl2 commented Feb 23, 2024 •
edited by FedeGueli

Designated KP.1 via cov-lineages/pango-designation@4241e54

@aviczhl2 aviczhl2 added this to the KP.1 milestone Feb 23, 2024
FedeGueli referenced this issue in cov-lineages/pango-designation Feb 23, 2024
@corneliusroemer
Designate KP.1 (JN.1.11.1.1, S:K1086R)
4241e54
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designated Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest JN.1 S:456 S:1086 S:1104
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