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XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (17 seqs, 4 countries) #736

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aviczhl2 opened this issue Sep 2, 2023 · 7 comments
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XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (17 seqs, 4 countries) #736

aviczhl2 opened this issue Sep 2, 2023 · 7 comments
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@ryhisner
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designated FLip = S:L455F / S:F456L s:180-185
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GK.5 GK.5.1

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@aviczhl2
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aviczhl2 commented Sep 2, 2023 •
edited

XBB.1.5.70+C7732T,G22104T(S:G181V)+C15842T,G22100A(S:E180K,Orf1b:T792I)

GISAID query: G22100A,G22104T,del21992
No. of seqs: 6(USA 5, Japan 1)

First: EPI_ISL_18054791, USA, 2023-7-11
Latest: EPI_ISL_18128146, Japan, 2023-8-9

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image
@aviczhl2 aviczhl2 changed the title XBB.1.5.70+Orf1a:T792I,S:E180K,G181V (6 seqs, 2 countries) XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (6 seqs, 2 countries) Sep 2, 2023
@FedeGueli
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the double nuc close mutation could interest @ryhisner : G22104 G22100A giving GE180-181VK.
thx @aviczhl2 excellent spot as usual.

@aviczhl2 aviczhl2 changed the title XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (6 seqs, 2 countries) XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (7 seqs, 2 countries) Sep 5, 2023
@FedeGueli
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10

@FedeGueli FedeGueli changed the title XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (7 seqs, 2 countries) XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (10 seqs, 2 countries) Sep 8, 2023
@aviczhl2
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+1 Morroco

@aviczhl2 aviczhl2 changed the title XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (10 seqs, 2 countries) XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (11 seqs, 3 countries) Sep 13, 2023
@aviczhl2 aviczhl2 changed the title XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (11 seqs, 3 countries) XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (13 seqs, 3 countries) Sep 20, 2023
@FedeGueli
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it seems to have slowed down

@aviczhl2
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aviczhl2 commented Oct 3, 2023

+2 Trinidad & Tobago

@aviczhl2 aviczhl2 changed the title XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (13 seqs, 3 countries) XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (15 seqs, 4 countries) Oct 3, 2023
@aviczhl2 aviczhl2 changed the title XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (15 seqs, 4 countries) XBB.1.5.70+Orf1b:T792I,S:E180K,G181V (17 seqs, 4 countries) Oct 12, 2023
@aviczhl2
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Designated GK.5.1 @FedeGueli

@FedeGueli FedeGueli added this to the GK.5 milestone Oct 15, 2023
@FedeGueli
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GK.5 from cov-lineages/pango-designation@3223321

FedeGueli referenced this issue in cov-lineages/pango-designation Oct 15, 2023
@corneliusroemer
Designate GK.5 (S:G181V, Brazil) and GK.5.1 (S:E180K)
3223321
@FedeGueli FedeGueli modified the milestones: GK.5, GK.5 GK.5.1 Oct 15, 2023
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@ryhisner ryhisner

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designated FLip = S:L455F / S:F456L s:180-185
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