Genome Alignment ✨

Algorithm to align genome sequences with Time and Physical Memory constraints. Built as a small assignment for UBC CPSC 320 (Intermediate Algorithm Design and Analysis).

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Table of Contents

• Technology Stack 🛠️
• Prerequisites 🍪
• Setup And Deployment 🔧
• Contact 📧

Technology Stack 🛠️

Python

Prerequisites 🍪

You should have Python, Java SDK and Git installed on your PC, however this project was stored and run on UBC CS Department Unix servers which have all needed tools installed.

Setup And Deployment 🔧

1. Clone the repo using:

     git clone https://github.com/sassansh/Genome-Alignment.git

2. Run the following bash command:

   ./run_tests_genome_alignment.sh

   Running it on UBC Unix Servers:

   

3. It'll take about a minute to compare all the sequences. Once finished, you'll see the results in a csv file final_scores.csv like this:

Contact 📧

Sassan Shokoohi - sassansh@student.ubc.ca

Project Link: https://github.com/sassansh/Genome-Alignment