forked from easybuilders/easybuild-easyconfigs
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
{bio}[GCCcore/10.2.0] Longshot bumped to 0.4.3, required for artic ea…
- Loading branch information
Sassy
authored and
Sassy
committed
Sep 15, 2021
1 parent
48b4865
commit 30e0a63
Showing
1 changed file
with
41 additions
and
0 deletions.
There are no files selected for viewing
41 changes: 41 additions & 0 deletions
41
easybuild/easyconfigs/l/Longshot/Longshot-0.4.3-GCCcore-10.2.0.eb
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,41 @@ | ||
# This easyconfig was created by Simon Branford of the BEAR Software team at the University of Birmingham. | ||
# Updated to 0.4.3 and GCCcore-10.2.0 | ||
# J. Sassmannshausen (GSTT/NHS UK) | ||
# | ||
easyblock = 'Binary' | ||
|
||
name = 'Longshot' | ||
version = '0.4.3' | ||
|
||
homepage = 'https://github.com/pjedge/longshot' | ||
description = """Longshot is a variant calling tool for diploid genomes using long error prone reads such as Pacific | ||
Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). It takes as input an aligned BAM file and outputs | ||
a phased VCF file with variants and haplotype information. It can also output haplotype-separated BAM files that can | ||
be used for downstream analysis. Currently, it only calls single nucleotide variants (SNVs).""" | ||
|
||
toolchain = {'name': 'GCCcore', 'version': '10.2.0'} | ||
|
||
source_urls = ['https://github.com/pjedge/longshot/archive'] | ||
sources = ['v%(version)s.tar.gz'] | ||
checksums = ['cb2a27a165567ed10b43eb915b195d72193005008d6a91e0d9393282f22f3192'] | ||
|
||
builddependencies = [ | ||
('binutils', '2.35'), | ||
('Rust', '1.52.1'), | ||
('Clang', '11.0.1'), | ||
('zlib', '1.2.11'), | ||
('XZ', '5.2.5'), | ||
] | ||
|
||
extract_sources = True | ||
|
||
install_cmd = "cargo install --root %(installdir)s --path ." | ||
|
||
sanity_check_paths = { | ||
'files': ['bin/%(namelower)s'], | ||
'dirs': [], | ||
} | ||
|
||
sanity_check_commands = ["%(namelower)s --help"] | ||
|
||
moduleclass = 'bio' |