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Hi,
When I run , I got error:
>mm.combined <- IntegrateData(anchorset = mm.anchors) Merging dataset 11 into 10 Extracting anchors for merged samples Finding integration vectors Finding integration vector weights 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Integrating data Warning: Layer counts isn't present in the assay object; returning NULL Merging dataset 1 into 3 Extracting anchors for merged samples Finding integration vectors Finding integration vector weights 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Integrating data Warning: Layer counts isn't present in the assay object; returning NULL Merging dataset 4 into 3 1 Extracting anchors for merged samples Finding integration vectors Warning: Different cells in new layer data than already exists for scale.data Finding integration vector weights 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Integrating data Warning: Layer counts isn't present in the assay object; returning NULL Merging dataset 2 into 6 Extracting anchors for merged samples Finding integration vectors Finding integration vector weights 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Integrating data Warning: Layer counts isn't present in the assay object; returning NULL Merging dataset 5 into 6 2 Extracting anchors for merged samples Finding integration vectors Warning: Different cells in new layer data than already exists for scale.data Finding integration vector weights 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Integrating data Warning: Layer counts isn't present in the assay object; returning NULL Merging dataset 8 into 6 2 5 Extracting anchors for merged samples Finding integration vectors Warning: Different cells in new layer data than already exists for scale.data Finding integration vector weights 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Integrating data Warning: Layer counts isn't present in the assay object; returning NULL Merging dataset 3 1 4 into 10 11 Extracting anchors for merged samples Finding integration vectors Finding integration vector weights 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Integrating data Warning: Layer counts isn't present in the assay object; returning NULL Merging dataset 7 into 9 Extracting anchors for merged samples Finding integration vectors Finding integration vector weights Error in FindWeights(object = merged.obj, integration.name = integration.name, : Number of anchor cells is less than k.weight. Consider lowering k.weight to less than 66 or increase k.anchor.
I tried to set k.weight to NA, stll report error:
> mm.combined <- IntegrateData(anchorset = mm.anchors, k.weight = NA) Merging dataset 11 into 10 Extracting anchors for merged samples Error in if (nrow(x = filtered.anchors) < k.weight) { : missing value where TRUE/FALSE needed
If I set k.weight to 65. It works without any error.
My question is: is it correct to set it to 65? What about other numbers less than 66? How should I set this number?
Thx
The text was updated successfully, but these errors were encountered:
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Hi,
When I run , I got error:
I tried to set k.weight to NA, stll report error:
If I set k.weight to 65. It works without any error.
My question is: is it correct to set it to 65? What about other numbers less than 66? How should I set this number?
Thx
The text was updated successfully, but these errors were encountered: