.neurodocker.json

{
  "pkg_manager": "apt",
  "instructions": [
    [
      "base",
      "neurodebian@sha256:5fbbad8c68525b588a459092254094436aae9dc1f3920f8d871a03053b10377c"
    ],
    [
      "label",
      {
        "maintainer": "Christopher J. Markiewicz"
      }
    ],
    [
      "env",
      {
        "MKL_NUM_THREADS": "1",
        "OMP_NUM_THREADS": "1"
      }
    ],
    [
      "user",
      "neuro"
    ],
    [
      "workdir",
      "/home/neuro"
    ],
    [
      "miniconda",
      {
        "create_env": "neuro",
        "conda_install": [
          "python=3.6",
          "icu=64.2",
          "mkl=2019.4",
          "mkl-service=2.3.0",
          "git=2.23.0"
        ]
      }
    ],
    [
      "miniconda",
      {
        "use_env": "neuro",
        "conda_install": [
          "numpy=1.17.2",
          "scipy=1.3.1",
          "scikit-learn=0.21.3",
          "matplotlib=3.1.3",
          "seaborn=0.10.0",
          "pytables=3.5.2",
          "pandas=0.25.1",
          "patsy=0.5.1",
          "traits=5.1.2"
        ]
      }
    ],
    [
      "copy",
      [
        ".",
        "/src/fitlins"
      ]
    ],
    [
      "user",
      "root"
    ],
    [
      "run",
      "mkdir /work && chown -R neuro /src /work && chmod a+w /work"
    ],
    [
      "user",
      "neuro"
    ],
    [
      "arg",
      {
        "VERSION": ""
      }
    ],
    [
      "run",
      "echo \"$VERSION\" > /src/fitlins/VERSION && sed -i -e 's/crashfile_format = pklz/crashfile_format = txt/' /src/fitlins/fitlins/data/nipype.cfg"
    ],
    [
      "miniconda",
      {
        "use_env": "neuro",
        "pip_opts": "-r",
        "pip_install": [
          "/src/fitlins/requirements.txt",
          "/src/fitlins[all]"
        ],
        "activate": true
      }
    ],
    [
      "workdir",
      "/work"
    ],
    [
      "entrypoint",
      "/neurodocker/startup.sh fitlins"
    ],
    [
      "arg",
      {
        "BUILD_DATE": "",
        "VCS_REF": ""
      }
    ],
    [
      "label",
      {
        "org.label-schema.build-date": "$BUILD_DATE",
        "org.label-schema.name": "FitLins",
        "org.label-schema.description": "FitLins - Fit Linear Models to BIDS datasets",
        "org.label-schema.url": "http://github.com/poldracklab/fitlins",
        "org.label-schema.vcs-ref": "$VCS_REF",
        "org.label-schema.vcs-url": "https://github.com/poldracklab/fitlins",
        "org.label-schema.version": "$VERSION",
        "org.label-schema.schema-version": "1.0"
      }
    ]
  ]
}