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refactor: add breast cancer segmantation logic (#409)
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- this segmentation will dictate how the patients receive education content

Signed-off-by: Kathurima Kimathi <kathurimakimathi415@gmail.com>
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@KathurimaKimathi
KathurimaKimathi committed Apr 2, 2024
1 parent e08f702 commit 252974c
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Showing 4 changed files with 33 additions and 13 deletions.
4 changes: 2 additions & 2 deletions go.mod
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Expand Up @@ -36,7 +36,7 @@ require (
github.com/stretchr/testify v1.9.0
github.com/vektah/gqlparser/v2 v2.5.11
golang.org/x/oauth2 v0.18.0
google.golang.org/api v0.170.0
google.golang.org/api v0.172.0
)

require (
Expand Down Expand Up @@ -128,7 +128,7 @@ require (
google.golang.org/appengine v1.6.8 // indirect
google.golang.org/genproto v0.0.0-20240318140521-94a12d6c2237 // indirect
google.golang.org/genproto/googleapis/api v0.0.0-20240318140521-94a12d6c2237 // indirect
google.golang.org/genproto/googleapis/rpc v0.0.0-20240318140521-94a12d6c2237 // indirect
google.golang.org/genproto/googleapis/rpc v0.0.0-20240401170217-c3f982113cda // indirect
google.golang.org/grpc v1.62.1 // indirect
google.golang.org/protobuf v1.33.0 // indirect
gopkg.in/yaml.v2 v2.4.0 // indirect
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12 changes: 6 additions & 6 deletions go.sum
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Original file line number Diff line number Diff line change
Expand Up @@ -85,10 +85,10 @@ github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym
github.com/CloudyKit/fastprinter v0.0.0-20200109182630-33d98a066a53/go.mod h1:+3IMCy2vIlbG1XG/0ggNQv0SvxCAIpPM5b1nCz56Xno=
github.com/CloudyKit/jet/v3 v3.0.0/go.mod h1:HKQPgSJmdK8hdoAbKUUWajkHyHo4RaU5rMdUywE7VMo=
github.com/Joker/hpp v1.0.0/go.mod h1:8x5n+M1Hp5hC0g8okX3sR3vFQwynaX/UgSOM9MeBKzY=
github.com/SebastiaanKlippert/go-wkhtmltopdf v1.9.2 h1:enQwehstpeaAnsyse1Aqb6r0sU5UJbiNvIqVmPo+KWI=
github.com/SebastiaanKlippert/go-wkhtmltopdf v1.9.2/go.mod h1:SQq4xfIdvf6WYKSDxAJc+xOJdolt+/bc1jnQKMtPMvQ=
github.com/PuerkitoBio/goquery v1.9.1 h1:mTL6XjbJTZdpfL+Gwl5U2h1l9yEkJjhmlTeV9VPW7UI=
github.com/PuerkitoBio/goquery v1.9.1/go.mod h1:cW1n6TmIMDoORQU5IU/P1T3tGFunOeXEpGP2WHRwkbY=
github.com/SebastiaanKlippert/go-wkhtmltopdf v1.9.2 h1:enQwehstpeaAnsyse1Aqb6r0sU5UJbiNvIqVmPo+KWI=
github.com/SebastiaanKlippert/go-wkhtmltopdf v1.9.2/go.mod h1:SQq4xfIdvf6WYKSDxAJc+xOJdolt+/bc1jnQKMtPMvQ=
github.com/Shopify/goreferrer v0.0.0-20181106222321-ec9c9a553398/go.mod h1:a1uqRtAwp2Xwc6WNPJEufxJ7fx3npB4UV/JOLmbu5I0=
github.com/agnivade/levenshtein v1.0.1/go.mod h1:CURSv5d9Uaml+FovSIICkLbAUZ9S4RqaHDIsdSBg7lM=
github.com/agnivade/levenshtein v1.0.3/go.mod h1:4SFRZbbXWLF4MU1T9Qg0pGgH3Pjs+t6ie5efyrwRJXs=
Expand Down Expand Up @@ -939,8 +939,8 @@ google.golang.org/api v0.43.0/go.mod h1:nQsDGjRXMo4lvh5hP0TKqF244gqhGcr/YSIykhUk
google.golang.org/api v0.46.0/go.mod h1:ceL4oozhkAiTID8XMmJBsIxID/9wMXJVVFXPg4ylg3I=
google.golang.org/api v0.47.0/go.mod h1:Wbvgpq1HddcWVtzsVLyfLp8lDg6AA241LmgIL59tHXo=
google.golang.org/api v0.48.0/go.mod h1:71Pr1vy+TAZRPkPs/xlCf5SsU8WjuAWv1Pfjbtukyy4=
google.golang.org/api v0.170.0 h1:zMaruDePM88zxZBG+NG8+reALO2rfLhe/JShitLyT48=
google.golang.org/api v0.170.0/go.mod h1:/xql9M2btF85xac/VAm4PsLMTLVGUOpq4BE9R8jyNy8=
google.golang.org/api v0.172.0 h1:/1OcMZGPmW1rX2LCu2CmGUD1KXK1+pfzxotxyRUCCdk=
google.golang.org/api v0.172.0/go.mod h1:+fJZq6QXWfa9pXhnIzsjx4yI22d4aI9ZpLb58gvXjis=
google.golang.org/appengine v1.1.0/go.mod h1:EbEs0AVv82hx2wNQdGPgUI5lhzA/G0D9YwlJXL52JkM=
google.golang.org/appengine v1.4.0/go.mod h1:xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4=
google.golang.org/appengine v1.5.0/go.mod h1:xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4=
Expand Down Expand Up @@ -1002,8 +1002,8 @@ google.golang.org/genproto v0.0.0-20240318140521-94a12d6c2237 h1:PgNlNSx2Nq2/j4j
google.golang.org/genproto v0.0.0-20240318140521-94a12d6c2237/go.mod h1:9sVD8c25Af3p0rGs7S7LLsxWKFiJt/65LdSyqXBkX/Y=
google.golang.org/genproto/googleapis/api v0.0.0-20240318140521-94a12d6c2237 h1:RFiFrvy37/mpSpdySBDrUdipW/dHwsRwh3J3+A9VgT4=
google.golang.org/genproto/googleapis/api v0.0.0-20240318140521-94a12d6c2237/go.mod h1:Z5Iiy3jtmioajWHDGFk7CeugTyHtPvMHA4UTmUkyalE=
google.golang.org/genproto/googleapis/rpc v0.0.0-20240318140521-94a12d6c2237 h1:NnYq6UN9ReLM9/Y01KWNOWyI5xQ9kbIms5GGJVwS/Yc=
google.golang.org/genproto/googleapis/rpc v0.0.0-20240318140521-94a12d6c2237/go.mod h1:WtryC6hu0hhx87FDGxWCDptyssuo68sk10vYjF+T9fY=
google.golang.org/genproto/googleapis/rpc v0.0.0-20240401170217-c3f982113cda h1:LI5DOvAxUPMv/50agcLLoo+AdWc1irS9Rzz4vPuD1V4=
google.golang.org/genproto/googleapis/rpc v0.0.0-20240401170217-c3f982113cda/go.mod h1:WtryC6hu0hhx87FDGxWCDptyssuo68sk10vYjF+T9fY=
google.golang.org/grpc v1.19.0/go.mod h1:mqu4LbDTu4XGKhr4mRzUsmM4RtVoemTSY81AxZiDr8c=
google.golang.org/grpc v1.20.1/go.mod h1:10oTOabMzJvdu6/UiuZezV6QK5dSlG84ov/aaiqXj38=
google.golang.org/grpc v1.21.1/go.mod h1:oYelfM1adQP15Ek0mdvEgi9Df8B9CZIaU1084ijfRaM=
Expand Down
14 changes: 9 additions & 5 deletions pkg/clinical/application/dto/enums.go
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Original file line number Diff line number Diff line change
Expand Up @@ -488,16 +488,20 @@ func (e ObservationStatusEnum) MarshalGQL(w io.Writer) {
type SegmentationCategory string

const (
SegmentationCategoryNoRisk SegmentationCategory = "CERVICAL_CANCER_TIPS"
SegmentationCategoryLowRisk SegmentationCategory = "CERVICAL_CANCER_LOW_RISK"
SegmentationCategoryHighRiskPositive SegmentationCategory = "CERVICAL_CANCER_POSITIVE"
SegmentationCategoryHighRiskNegative SegmentationCategory = "CERVICAL_CANCER_HIGH_RISK"
SegmentationCategoryNoRisk SegmentationCategory = "CERVICAL_CANCER_TIPS"
SegmentationCategoryLowRisk SegmentationCategory = "CERVICAL_CANCER_LOW_RISK"
SegmentationCategoryHighRiskPositive SegmentationCategory = "CERVICAL_CANCER_POSITIVE"
SegmentationCategoryHighRiskNegative SegmentationCategory = "CERVICAL_CANCER_HIGH_RISK"
SegmentationBreastCategoryHighRisk SegmentationCategory = "BREAST_CANCER_HIGH_RISK"
SegmentationBreastCategoryAverageRisk SegmentationCategory = "BREAST_CANCER_AVERAGE_RISK"
)

// IsValid checks validity of a SegmentationCategory enum
func (c SegmentationCategory) IsValid() bool {
switch c {
case SegmentationCategoryNoRisk, SegmentationCategoryLowRisk, SegmentationCategoryHighRiskPositive, SegmentationCategoryHighRiskNegative:
case SegmentationCategoryNoRisk, SegmentationCategoryLowRisk,
SegmentationCategoryHighRiskPositive, SegmentationCategoryHighRiskNegative,
SegmentationBreastCategoryHighRisk, SegmentationBreastCategoryAverageRisk:
return true
}

Expand Down
16 changes: 16 additions & 0 deletions pkg/clinical/usecases/clinical/questionnaire_response.go
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Original file line number Diff line number Diff line change
Expand Up @@ -179,6 +179,14 @@ func (u *UseCasesClinicalImpl) generateQuestionnaireReviewSummary(
if err != nil {
return "", err
}

err := u.infrastructure.Pubsub.NotifySegmentation(ctx, dto.SegmentationPayload{
ClinicalID: *patient.Resource.ID,
SegmentLabel: dto.SegmentationBreastCategoryHighRisk,
})
if err != nil {
return "", err
}
} else {
riskLevel, err = u.recordRiskAssessment(
ctx,
Expand All @@ -191,6 +199,14 @@ func (u *UseCasesClinicalImpl) generateQuestionnaireReviewSummary(
if err != nil {
return "", err
}

err := u.infrastructure.Pubsub.NotifySegmentation(ctx, dto.SegmentationPayload{
ClinicalID: *patient.Resource.ID,
SegmentLabel: dto.SegmentationBreastCategoryAverageRisk,
})
if err != nil {
return "", err
}
}

default:
Expand Down

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