feat: create media in FHIR respository (#241)

- API upload the media to GCS and appends the resulting URL as the attachment URI

Signed-off-by: Kathurima Kimathi <kathurimakimathi415@gmail.com>

.github/workflows/ci.yml

@@ -30,6 +30,7 @@ env:
   MYCAREHUB_CLIENT_ID: ${{ secrets.MYCAREHUB_CLIENT_ID }}
   MYCAREHUB_CLIENT_SECRET: ${{ secrets.MYCAREHUB_CLIENT_SECRET }}
   MYCAREHUB_INTROSPECT_URL: ${{ secrets.MYCAREHUB_INTROSPECT_URL }}
+  CLINICAL_BUCKET_NAME: ${{ secrets.CLINICAL_BUCKET_NAME }}
 
 
 jobs:

.github/workflows/staging_multitenant.yaml

@@ -40,6 +40,7 @@ env:
   MYCAREHUB_CLIENT_ID: ${{ secrets.MYCAREHUB_CLIENT_ID }}
   MYCAREHUB_CLIENT_SECRET: ${{ secrets.MYCAREHUB_CLIENT_SECRET }}
   MYCAREHUB_INTROSPECT_URL: ${{ secrets.MYCAREHUB_INTROSPECT_URL }}
+  CLINICAL_BUCKET_NAME: ${{ secrets.CLINICAL_BUCKET_NAME }}
 
 jobs:
   deploy_to_multitenant_staging:

deploy/charts/clinical/templates/deployment.yaml

@@ -118,6 +118,9 @@ spec:
             - name: MYCAREHUB_INTROSPECT_URL
               value: {{ .Values.app.container.env.mycarehubIntrospectURL | quote }}
 
+            - name: CLINICAL_BUCKET_NAME
+              value: {{ .Values.app.container.env.clinicalBucketName | quote }}
+
           volumeMounts:
           - name: {{ .Values.app.container.env.googleApplicationCredentialsSecret.name }}
             mountPath: {{ .Values.app.container.env.googleApplicationCredentialsSecret.mountPath }}

deploy/deploy.sh

@@ -48,6 +48,7 @@ helm upgrade \
     --set app.container.env.mycarehubClientID="${MYCAREHUB_CLIENT_ID}"\
     --set app.container.env.mycarehubClientSecret="${MYCAREHUB_CLIENT_SECRET}"\
     --set app.container.env.mycarehubIntrospectURL="${MYCAREHUB_INTROSPECT_URL}"\
+    --set app.container.env.clinicalBucketName="${CLINICAL_BUCKET_NAME}"\
     --set networking.issuer.name="letsencrypt-prod"\
     --set networking.issuer.privateKeySecretRef="letsencrypt-prod"\
     --set networking.ingress.host="${APP_DOMAIN}"\

go.mod

@@ -4,20 +4,21 @@ go 1.19
 
 require (
 	cloud.google.com/go/firestore v1.9.0
-	cloud.google.com/go/pubsub v1.28.0
-	github.com/99designs/gqlgen v0.17.28
+	cloud.google.com/go/pubsub v1.30.1
+	cloud.google.com/go/storage v1.30.1
+	github.com/99designs/gqlgen v0.17.31
 	github.com/ahmetb/go-linq/v3 v3.2.0
-	github.com/asaskevich/govalidator v0.0.0-20210307081110-f21760c49a8d
+	github.com/asaskevich/govalidator v0.0.0-20230301143203-a9d515a09cc2
 	github.com/brianvoe/gofakeit v3.18.0+incompatible
-	github.com/getsentry/sentry-go v0.18.0
+	github.com/getsentry/sentry-go v0.21.0
 	github.com/gin-contrib/cors v1.4.0
 	github.com/gin-gonic/gin v1.9.0
 	github.com/go-playground/validator v9.31.0+incompatible
 	github.com/google/uuid v1.3.0
 	github.com/jarcoal/httpmock v1.3.0
 	github.com/labstack/gommon v0.4.0
 	github.com/mitchellh/mapstructure v1.5.0
-	github.com/rs/xid v1.4.0
+	github.com/rs/xid v1.5.0
 	github.com/savannahghi/authutils v0.0.10
 	github.com/savannahghi/converterandformatter v0.0.11
 	github.com/savannahghi/enumutils v0.0.3
@@ -33,69 +34,70 @@ require (
 	github.com/sirupsen/logrus v1.9.0
 	github.com/stretchr/testify v1.8.2
 	github.com/vektah/gqlparser/v2 v2.5.1
-	golang.org/x/oauth2 v0.5.0
-	google.golang.org/api v0.110.0
+	golang.org/x/oauth2 v0.8.0
+	google.golang.org/api v0.122.0
 	gopkg.in/yaml.v2 v2.4.0
 )
 
 require (
-	cloud.google.com/go v0.110.0 // indirect
-	cloud.google.com/go/compute v1.18.0 // indirect
+	cloud.google.com/go v0.110.2 // indirect
+	cloud.google.com/go/compute v1.19.2 // indirect
 	cloud.google.com/go/compute/metadata v0.2.3 // indirect
 	cloud.google.com/go/errorreporting v0.3.0 // indirect
-	cloud.google.com/go/iam v0.12.0 // indirect
-	cloud.google.com/go/logging v1.6.1 // indirect
-	cloud.google.com/go/longrunning v0.4.1 // indirect
-	cloud.google.com/go/monitoring v1.12.0 // indirect
+	cloud.google.com/go/iam v1.0.1 // indirect
+	cloud.google.com/go/logging v1.7.0 // indirect
+	cloud.google.com/go/longrunning v0.4.2 // indirect
+	cloud.google.com/go/monitoring v1.14.0 // indirect
 	cloud.google.com/go/profiler v0.3.1 // indirect
-	cloud.google.com/go/storage v1.29.0 // indirect
-	cloud.google.com/go/trace v1.8.0 // indirect
-	contrib.go.opencensus.io/exporter/stackdriver v0.13.11 // indirect
+	cloud.google.com/go/trace v1.9.1 // indirect
+	contrib.go.opencensus.io/exporter/stackdriver v0.13.14 // indirect
 	firebase.google.com/go v3.13.0+incompatible // indirect
 	github.com/agnivade/levenshtein v1.1.1 // indirect
-	github.com/aws/aws-sdk-go v1.44.208 // indirect
-	github.com/bytedance/sonic v1.8.3 // indirect
+	github.com/aws/aws-sdk-go v1.44.261 // indirect
+	github.com/bytedance/sonic v1.8.8 // indirect
 	github.com/census-instrumentation/opencensus-proto v0.4.1 // indirect
 	github.com/chenzhuoyu/base64x v0.0.0-20221115062448-fe3a3abad311 // indirect
 	github.com/cpuguy83/go-md2man/v2 v2.0.2 // indirect
 	github.com/davecgh/go-spew v1.1.1 // indirect
 	github.com/felixge/httpsnoop v1.0.3 // indirect
 	github.com/gin-contrib/sse v0.1.0 // indirect
-	github.com/go-logr/logr v1.2.3 // indirect
+	github.com/go-logr/logr v1.2.4 // indirect
 	github.com/go-logr/stdr v1.2.2 // indirect
 	github.com/go-playground/locales v0.14.1 // indirect
 	github.com/go-playground/universal-translator v0.18.1 // indirect
-	github.com/go-playground/validator/v10 v10.11.2 // indirect
-	github.com/goccy/go-json v0.10.0 // indirect
+	github.com/go-playground/validator/v10 v10.13.0 // indirect
+	github.com/goccy/go-json v0.10.2 // indirect
 	github.com/gofrs/uuid v4.4.0+incompatible // indirect
 	github.com/golang-jwt/jwt v3.2.2+incompatible // indirect
 	github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da // indirect
-	github.com/golang/protobuf v1.5.2 // indirect
+	github.com/golang/protobuf v1.5.3 // indirect
 	github.com/google/go-cmp v0.5.9 // indirect
-	github.com/google/pprof v0.0.0-20230222194610-99052d3372e7 // indirect
+	github.com/google/pprof v0.0.0-20230510103437-eeec1cb781c3 // indirect
+	github.com/google/s2a-go v0.1.3 // indirect
 	github.com/googleapis/enterprise-certificate-proxy v0.2.3 // indirect
-	github.com/googleapis/gax-go/v2 v2.7.0 // indirect
+	github.com/googleapis/gax-go/v2 v2.8.0 // indirect
 	github.com/gorilla/websocket v1.5.0 // indirect
-	github.com/hashicorp/golang-lru/v2 v2.0.1 // indirect
+	github.com/hashicorp/golang-lru/v2 v2.0.2 // indirect
 	github.com/imroc/req v0.3.2 // indirect
 	github.com/jmespath/go-jmespath v0.4.0 // indirect
 	github.com/json-iterator/go v1.1.12 // indirect
 	github.com/klauspost/cpuid/v2 v2.2.4 // indirect
-	github.com/leodido/go-urn v1.2.2 // indirect
+	github.com/leodido/go-urn v1.2.4 // indirect
 	github.com/lithammer/shortuuid v3.0.0+incompatible // indirect
 	github.com/mattn/go-colorable v0.1.13 // indirect
-	github.com/mattn/go-isatty v0.0.17 // indirect
+	github.com/mattn/go-isatty v0.0.18 // indirect
 	github.com/modern-go/concurrent v0.0.0-20180306012644-bacd9c7ef1dd // indirect
 	github.com/modern-go/reflect2 v1.0.2 // indirect
 	github.com/pelletier/go-toml/v2 v2.0.7 // indirect
 	github.com/pmezard/go-difflib v1.0.0 // indirect
+	github.com/prometheus/prometheus v0.43.1 // indirect
 	github.com/russross/blackfriday/v2 v2.1.0 // indirect
 	github.com/shopspring/decimal v1.3.1 // indirect
 	github.com/ttacon/builder v0.0.0-20170518171403-c099f663e1c2 // indirect
 	github.com/ttacon/libphonenumber v1.2.1 // indirect
 	github.com/twitchyliquid64/golang-asm v0.15.1 // indirect
-	github.com/ugorji/go/codec v1.2.10 // indirect
-	github.com/urfave/cli/v2 v2.25.1 // indirect
+	github.com/ugorji/go/codec v1.2.11 // indirect
+	github.com/urfave/cli/v2 v2.25.3 // indirect
 	github.com/valyala/bytebufferpool v1.0.0 // indirect
 	github.com/valyala/fasttemplate v1.2.2 // indirect
 	github.com/vmihailenco/msgpack v4.0.4+incompatible // indirect
@@ -104,28 +106,26 @@ require (
 	github.com/xeipuuv/gojsonschema v1.2.0 // indirect
 	github.com/xrash/smetrics v0.0.0-20201216005158-039620a65673 // indirect
 	go.opencensus.io v0.24.0 // indirect
-	go.opentelemetry.io/contrib v1.14.0 // indirect
-	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.21.0 // indirect
-	go.opentelemetry.io/otel v1.13.0 // indirect
-	go.opentelemetry.io/otel/exporters/jaeger v1.13.0 // indirect
-	go.opentelemetry.io/otel/internal/metric v0.21.0 // indirect
-	go.opentelemetry.io/otel/metric v0.21.0 // indirect
-	go.opentelemetry.io/otel/sdk v1.13.0 // indirect
-	go.opentelemetry.io/otel/trace v1.13.0 // indirect
+	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.41.1 // indirect
+	go.opentelemetry.io/otel v1.15.1 // indirect
+	go.opentelemetry.io/otel/exporters/jaeger v1.15.1 // indirect
+	go.opentelemetry.io/otel/metric v0.38.1 // indirect
+	go.opentelemetry.io/otel/sdk v1.15.1 // indirect
+	go.opentelemetry.io/otel/trace v1.15.1 // indirect
 	golang.org/x/arch v0.3.0 // indirect
-	golang.org/x/crypto v0.7.0 // indirect
+	golang.org/x/crypto v0.9.0 // indirect
 	golang.org/x/mod v0.10.0 // indirect
-	golang.org/x/net v0.8.0 // indirect
-	golang.org/x/sync v0.1.0 // indirect
-	golang.org/x/sys v0.7.0 // indirect
-	golang.org/x/text v0.8.0 // indirect
+	golang.org/x/net v0.10.0 // indirect
+	golang.org/x/sync v0.2.0 // indirect
+	golang.org/x/sys v0.8.0 // indirect
+	golang.org/x/text v0.9.0 // indirect
 	golang.org/x/time v0.3.0 // indirect
-	golang.org/x/tools v0.7.0 // indirect
+	golang.org/x/tools v0.9.1 // indirect
 	golang.org/x/xerrors v0.0.0-20220907171357-04be3eba64a2 // indirect
 	google.golang.org/appengine v1.6.7 // indirect
-	google.golang.org/genproto v0.0.0-20230223222841-637eb2293923 // indirect
-	google.golang.org/grpc v1.53.0 // indirect
-	google.golang.org/protobuf v1.28.1 // indirect
+	google.golang.org/genproto v0.0.0-20230410155749-daa745c078e1 // indirect
+	google.golang.org/grpc v1.55.0 // indirect
+	google.golang.org/protobuf v1.30.0 // indirect
 	gopkg.in/yaml.v3 v3.0.1 // indirect
 	moul.io/http2curl v1.0.0 // indirect
 )